3,351 research outputs found
A novel real-time computational framework for detecting catheters and rigid guidewires in cardiac catheterization procedures
Purpose: Catheters and guidewires are used extensively in cardiac catheterization procedures such as heart arrhythmia treatment (ablation), angioplasty and congenital heart disease treatment. Detecting their positions in fluoroscopic X-ray images is important for several clinical applications, for example, motion compensation, co-registration between 2D and 3D imaging modalities and 3D object reconstruction. Methods: For the generalized framework, a multiscale vessel enhancement filter is first used to enhance the visibility of wire-like structures in the X-ray images. After applying adaptive binarization method, the centerlines of wire-like objects were extracted. Finally, the catheters and guidewires were detected as a smooth path which is reconstructed from centerlines of target wire-like objects. In order to classify electrode catheters which are mainly used in electrophysiology procedures, additional steps were proposed. First, a blob detection method, which is embedded in vessel enhancement filter with no additional computational cost, localizes electrode positions on catheters. Then the type of electrode catheters can be recognized by detecting the number of electrodes and also the shape created by a series of electrodes. Furthermore, for detecting guiding catheters or guidewires, a localized machine learning algorithm is added into the framework to distinguish between target wire objects and other wire-like artifacts. The proposed framework were tested on total 10,624 images which are from 102 image sequences acquired from 63 clinical cases. Results: Detection errors for the coronary sinus (CS) catheter, lasso catheter ring and lasso catheter body are 0.56 ± 0.28 mm, 0.64 ± 0.36 mm and 0.66 ± 0.32 mm, respectively, as well as success rates of 91.4%, 86.3% and 84.8% were achieved. Detection errors for guidewires and guiding catheters are 0.62 ± 0.48 mm and success rates are 83.5%. Conclusion: The proposed computational framework do not require any user interaction or prior models and it can detect multiple catheters or guidewires simultaneously and in real-time. The accuracy of the proposed framework is sub-mm and the methods are robust toward low-dose X-ray fluoroscopic images, which are mainly used during procedures to maintain low radiation dose
An In-Depth Statistical Review of Retinal Image Processing Models from a Clinical Perspective
The burgeoning field of retinal image processing is critical in facilitating early diagnosis and treatment of retinal diseases, which are amongst the leading causes of vision impairment globally. Despite rapid advancements, existing machine learning models for retinal image processing are characterized by significant limitations, including disparities in pre-processing, segmentation, and classification methodologies, as well as inconsistencies in post-processing operations. These limitations hinder the realization of accurate, reliable, and clinically relevant outcomes. This paper provides an in-depth statistical review of extant machine learning models used in retinal image processing, meticulously comparing them based on their internal operating characteristics and performance levels. By adopting a robust analytical approach, our review delineates the strengths and weaknesses of current models, offering comprehensive insights that are instrumental in guiding future research and development in this domain. Furthermore, this review underscores the potential clinical impacts of these models, highlighting their pivotal role in enhancing diagnostic accuracy, prognostic assessments, and therapeutic interventions for retinal disorders. In conclusion, our work not only bridges the existing knowledge gap in the literature but also paves the way for the evolution of more sophisticated and clinically-aligned retinal image processing models, ultimately contributing to improved patient outcomes and advancements in ophthalmic care
Review of photoacoustic imaging plus X
Photoacoustic imaging (PAI) is a novel modality in biomedical imaging
technology that combines the rich optical contrast with the deep penetration of
ultrasound. To date, PAI technology has found applications in various
biomedical fields. In this review, we present an overview of the emerging
research frontiers on PAI plus other advanced technologies, named as PAI plus
X, which includes but not limited to PAI plus treatment, PAI plus new circuits
design, PAI plus accurate positioning system, PAI plus fast scanning systems,
PAI plus novel ultrasound sensors, PAI plus advanced laser sources, PAI plus
deep learning, and PAI plus other imaging modalities. We will discuss each
technology's current state, technical advantages, and prospects for
application, reported mostly in recent three years. Lastly, we discuss and
summarize the challenges and potential future work in PAI plus X area
Automated Vessel Segmentation Using Infinite Perimeter Active Contour Model with Hybrid Region Information with Application to Retinal Images
Automated detection of blood vessel structures is becoming of crucial interest for better management of vascular disease. In this paper, we propose a new infinite active contour model that uses hybrid region information of the image to approach this problem. More specifically, an infinite perimeter regularizer, provided by using L 2 Lebesgue measure of the γ-neighborhood of boundaries, allows for better detection of small oscillatory (branching) structures than the traditional models based on the length of a feature's boundaries (i.e., H 1 Hausdorff measure). Moreover, for better general segmentation performance, the proposed model takes the advantage of using different types of region information, such as the combination of intensity information and local phase based enhancement map. The local phase based enhancement map is used for its superiority in preserving vessel edges while the given image intensity information will guarantee a correct feature's segmentation. We evaluate the performance of the proposed model by applying it to three public retinal image datasets (two datasets of color fundus photography and one fluorescein angiography dataset). The proposed model outperforms its competitors when compared with other widely used unsupervised and supervised methods. For example, the sensitivity (0.742), specificity (0.982) and accuracy (0.954) achieved on the DRIVE dataset are very close to those of the second observer's annotations
Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images
This paper describes an algorithm for extracting pulmonary vascular trees (arteries plus veins) from
three-dimensional (3D) thoracic computed tomographic (CT) images. The algorithm integrates tube
enhancement filter and traversal approaches which are based on eigenvalues and eigenvectors of a
Hessian matrix to extract thin peripheral segments as well as thick vessels close to the lung hilum.
The resultant algorithm was applied to a simulation data set and 44 scans from 22 human subjects
imaged via multidetector-row CT (MDCT) during breath holds at 85% and 20% of their vital capacity.
A quantitative validation was performed with more than 1000 manually identified points selected from
inside the vessel segments to assess true positives (TPs) and 1000 points randomly placed outside
of the vessels to evaluate false positives (FPs) in each case. On average, for both the high and low
volume lung images, 99% of the points was properly marked as vessel and 1% of the points were
assessed as FPs. Our hybrid segmentation algorithm provides a highly reliable method of segmenting
the combined pulmonary venous and arterial trees which in turn will serve as a critical starting point
for further quantitative analysis tasks and aid in our overall goal of establishing a normative atlas of the
human lung
Vessel tractography using an intensity based tensor model with branch detection
In this paper, we present a tubular structure seg- mentation method that utilizes a second order tensor constructed from directional intensity measurements, which is inspired from diffusion tensor image (DTI) modeling. The constructed anisotropic tensor which is fit inside a vessel drives the segmen- tation analogously to a tractography approach in DTI. Our model is initialized at a single seed point and is capable of capturing whole vessel trees by an automatic branch detection algorithm developed in the same framework. The centerline of the vessel as well as its thickness is extracted. Performance results within the Rotterdam Coronary Artery Algorithm Evaluation framework are provided for comparison with existing techniques. 96.4% average overlap with ground truth delineated by experts is obtained in addition to other measures reported in the paper. Moreover, we demonstrate further quantitative results over synthetic vascular datasets, and we provide quantitative experiments for branch detection on patient Computed Tomography Angiography (CTA) volumes, as well as qualitative evaluations on the same CTA datasets, from visual scores by a cardiologist expert
Computational Analysis of Fundus Images: Rule-Based and Scale-Space Models
Fundus images are one of the most important imaging examinations in modern ophthalmology
because they are simple, inexpensive and, above all, noninvasive.
Nowadays, the acquisition and
storage of highresolution
fundus images is relatively easy and fast. Therefore, fundus imaging
has become a fundamental investigation in retinal lesion detection, ocular health monitoring and
screening programmes. Given the large volume and clinical complexity associated with these images,
their analysis and interpretation by trained clinicians becomes a timeconsuming
task and is
prone to human error. Therefore, there is a growing interest in developing automated approaches
that are affordable and have high sensitivity and specificity. These automated approaches need to
be robust if they are to be used in the general population to diagnose and track retinal diseases. To
be effective, the automated systems must be able to recognize normal structures and distinguish
them from pathological clinical manifestations.
The main objective of the research leading to this thesis was to develop automated systems capable
of recognizing and segmenting retinal anatomical structures and retinal pathological clinical
manifestations associated with the most common retinal diseases. In particular, these automated
algorithms were developed on the premise of robustness and efficiency to deal with the difficulties
and complexity inherent in these images. Four objectives were considered in the analysis of
fundus images. Segmentation of exudates, localization of the optic disc, detection of the midline
of blood vessels, segmentation of the vascular network and detection of microaneurysms.
In addition, we also evaluated the detection of diabetic retinopathy on fundus images using the
microaneurysm detection method. An overview of the state of the art is presented to compare the
performance of the developed approaches with the main methods described in the literature for
each of the previously described objectives. To facilitate the comparison of methods, the state of
the art has been divided into rulebased
methods and machine learningbased
methods.
In the research reported in this paper, rulebased
methods based on image processing methods
were preferred over machine learningbased
methods. In particular, scalespace
methods proved
to be effective in achieving the set goals.
Two different approaches to exudate segmentation were developed. The first approach is based on
scalespace
curvature in combination with the local maximum of a scalespace
blob detector and
dynamic thresholds. The second approach is based on the analysis of the distribution function of
the maximum values of the noise map in combination with morphological operators and adaptive
thresholds. Both approaches perform a correct segmentation of the exudates and cope well with
the uneven illumination and contrast variations in the fundus images.
Optic disc localization was achieved using a new technique called cumulative sum fields, which was
combined with a vascular enhancement method. The algorithm proved to be reliable and efficient,
especially for pathological images. The robustness of the method was tested on 8 datasets.
The detection of the midline of the blood vessels was achieved using a modified corner detector
in combination with binary philtres and dynamic thresholding. Segmentation of the vascular network
was achieved using a new scalespace
blood vessels enhancement method. The developed
methods have proven effective in detecting the midline of blood vessels and segmenting vascular
networks.
The microaneurysm detection method relies on a scalespace
microaneurysm detection and labelling
system. A new approach based on the neighbourhood of the microaneurysms was used
for labelling. Microaneurysm detection enabled the assessment of diabetic retinopathy detection.
The microaneurysm detection method proved to be competitive with other methods, especially with highresolution
images. Diabetic retinopathy detection with the developed microaneurysm
detection method showed similar performance to other methods and human experts.
The results of this work show that it is possible to develop reliable and robust scalespace
methods
that can detect various anatomical structures and pathological features of the retina. Furthermore,
the results obtained in this work show that although recent research has focused on machine learning
methods, scalespace
methods can achieve very competitive results and typically have greater
independence from image acquisition. The methods developed in this work may also be relevant
for the future definition of new descriptors and features that can significantly improve the results
of automated methods.As imagens do fundo do olho são hoje um dos principais exames imagiológicos da oftalmologia
moderna, pela sua simplicidade, baixo custo e acima de tudo pelo seu carácter nãoinvasivo.
A
aquisição e armazenamento de imagens do fundo do olho com alta resolução é também relativamente
simples e rápida. Desta forma, as imagens do fundo do olho são um exame fundamental
na identificação de alterações retinianas, monitorização da saúde ocular, e em programas de rastreio.
Considerando o elevado volume e complexidade clínica associada a estas imagens, a análise
e interpretação das mesmas por clínicos treinados tornase
uma tarefa morosa e propensa a erros
humanos. Assim, há um interesse crescente no desenvolvimento de abordagens automatizadas,
acessíveis em custo, e com uma alta sensibilidade e especificidade. Estas devem ser robustas para
serem aplicadas à população em geral no diagnóstico e seguimento de doenças retinianas. Para
serem eficazes, os sistemas de análise têm que conseguir detetar e distinguir estruturas normais
de sinais patológicos.
O objetivo principal da investigação que levou a esta tese de doutoramento é o desenvolvimento
de sistemas automáticos capazes de detetar e segmentar as estruturas anatómicas da retina, e os
sinais patológicos retinianos associados às doenças retinianas mais comuns. Em particular, estes
algoritmos automatizados foram desenvolvidos segundo as premissas de robustez e eficácia para
lidar com as dificuldades e complexidades inerentes a estas imagens.
Foram considerados quatro objetivos de análise de imagens do fundo do olho. São estes, a segmentação
de exsudados, a localização do disco ótico, a deteção da linha central venosa dos vasos
sanguíneos e segmentação da rede vascular, e a deteção de microaneurismas. De acrescentar que
usando o método de deteção de microaneurismas, avaliouse
também a capacidade de deteção da
retinopatia diabética em imagens do fundo do olho.
Para comparar o desempenho das metodologias desenvolvidas neste trabalho, foi realizado um
levantamento do estado da arte, onde foram considerados os métodos mais relevantes descritos na
literatura para cada um dos objetivos descritos anteriormente. Para facilitar a comparação entre
métodos, o estado da arte foi dividido em metodologias de processamento de imagem e baseadas
em aprendizagem máquina.
Optouse
no trabalho de investigação desenvolvido pela utilização de metodologias de análise espacial
de imagem em detrimento de metodologias baseadas em aprendizagem máquina. Em particular,
as metodologias baseadas no espaço de escalas mostraram ser efetivas na obtenção dos
objetivos estabelecidos.
Para a segmentação de exsudados foram usadas duas abordagens distintas. A primeira abordagem
baseiase
na curvatura em espaço de escalas em conjunto com a resposta máxima local de um detetor
de manchas em espaço de escalas e limiares dinâmicos. A segunda abordagem baseiase
na
análise do mapa de distribuição de ruído em conjunto com operadores morfológicos e limiares
adaptativos. Ambas as abordagens fazem uma segmentação dos exsudados de elevada precisão,
além de lidarem eficazmente com a iluminação nãouniforme
e a variação de contraste presente
nas imagens do fundo do olho. A localização do disco ótico foi conseguida com uma nova técnica
designada por campos de soma acumulativos, combinada com métodos de melhoramento da rede
vascular. O algoritmo revela ser fiável e eficiente, particularmente em imagens patológicas. A robustez
do método foi verificada pela sua avaliação em oito bases de dados. A deteção da linha central
dos vasos sanguíneos foi obtida através de um detetor de cantos modificado em conjunto com
filtros binários e limiares dinâmicos. A segmentação da rede vascular foi conseguida com um novo
método de melhoramento de vasos sanguíneos em espaço de escalas. Os métodos desenvolvidos mostraram ser eficazes na deteção da linha central dos vasos sanguíneos e na segmentação da rede
vascular. Finalmente, o método para a deteção de microaneurismas assenta num formalismo de
espaço de escalas na deteção e na rotulagem dos microaneurismas. Para a rotulagem foi utilizada
uma nova abordagem da vizinhança dos candidatos a microaneurismas. A deteção de microaneurismas
permitiu avaliar também a deteção da retinopatia diabética. O método para a deteção
de microaneurismas mostrou ser competitivo quando comparado com outros métodos, em particular
em imagens de alta resolução. A deteção da retinopatia diabética exibiu um desempenho
semelhante a outros métodos e a especialistas humanos.
Os trabalhos descritos nesta tese mostram ser possível desenvolver uma abordagem fiável e robusta
em espaço de escalas capaz de detetar diferentes estruturas anatómicas e sinais patológicos
da retina.
Além disso, os resultados obtidos mostram que apesar de a pesquisa mais recente concentrarse
em metodologias de aprendizagem máquina, as metodologias de análise espacial apresentam
resultados muito competitivos e tipicamente independentes do equipamento de aquisição das imagens.
As metodologias desenvolvidas nesta tese podem ser importantes na definição de novos
descritores e características, que podem melhorar significativamente o resultado de métodos automatizados
MeshfreeFlowNet: A Physics-Constrained Deep Continuous Space-Time Super-Resolution Framework
We propose MeshfreeFlowNet, a novel deep learning-based super-resolution
framework to generate continuous (grid-free) spatio-temporal solutions from the
low-resolution inputs. While being computationally efficient, MeshfreeFlowNet
accurately recovers the fine-scale quantities of interest. MeshfreeFlowNet
allows for: (i) the output to be sampled at all spatio-temporal resolutions,
(ii) a set of Partial Differential Equation (PDE) constraints to be imposed,
and (iii) training on fixed-size inputs on arbitrarily sized spatio-temporal
domains owing to its fully convolutional encoder. We empirically study the
performance of MeshfreeFlowNet on the task of super-resolution of turbulent
flows in the Rayleigh-Benard convection problem. Across a diverse set of
evaluation metrics, we show that MeshfreeFlowNet significantly outperforms
existing baselines. Furthermore, we provide a large scale implementation of
MeshfreeFlowNet and show that it efficiently scales across large clusters,
achieving 96.80% scaling efficiency on up to 128 GPUs and a training time of
less than 4 minutes.Comment: Supplementary Video: https://youtu.be/mjqwPch9gDo. Accepted to SC2
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