Rectilinear Planarity of Partial 2-Trees

A graph is rectilinear planar if it admits a planar orthogonal drawing without bends. While testing rectilinear planarity is NP-hard in general (Garg and Tamassia, 2001), it is a long-standing open problem to establish a tight upper bound on its complexity for partial 2-trees, i.e., graphs whose biconnected components are series-parallel. We describe a new O(n^2)-time algorithm to test rectilinear planarity of partial 2-trees, which improves over the current best bound of O(n^3 \log n) (Di Giacomo et al., 2022). Moreover, for partial 2-trees where no two parallel-components in a biconnected component share a pole, we are able to achieve optimal O(n)-time complexity. Our algorithms are based on an extensive study and a deeper understanding of the notion of orthogonal spirality, introduced several years ago (Di Battista et al, 1998) to describe how much an orthogonal drawing of a subgraph is rolled-up in an orthogonal drawing of the graph.Comment: arXiv admin note: substantial text overlap with arXiv:2110.00548 Appears in the Proceedings of the 30th International Symposium on Graph Drawing and Network Visualization (GD 2022

A simple linear time algorithm for the locally connected spanning tree problem on maximal planar chordal graphs

A locally connected spanning tree (LCST) T of a graph G is a spanning tree of G such that, for each node, its neighborhood in T induces a connected sub- graph in G. The problem of determining whether a graph contains an LCST or not has been proved to be NP-complete, even if the graph is planar or chordal. The main result of this paper is a simple linear time algorithm that, given a maximal planar chordal graph, determines in linear time whether it contains an LCST or not, and produces one if it exists. We give an anal- ogous result for the case when the input graph is a maximal outerplanar graph

Operads and Phylogenetic Trees

We construct an operad $\mathrm{Phyl}$ whose operations are the edge-labelled trees used in phylogenetics. This operad is the coproduct of $\mathrm{Com}$, the operad for commutative semigroups, and $[0,\infty)$, the operad with unary operations corresponding to nonnegative real numbers, where composition is addition. We show that there is a homeomorphism between the space of $n$-ary operations of $\mathrm{Phyl}$ and $\mathcal{T}_n\times [0,\infty)^{n+1}$, where $\mathcal{T}_n$ is the space of metric $n$-trees introduced by Billera, Holmes and Vogtmann. Furthermore, we show that the Markov models used to reconstruct phylogenetic trees from genome data give coalgebras of $\mathrm{Phyl}$. These always extend to coalgebras of the larger operad $\mathrm{Com} + [0,\infty]$, since Markov processes on finite sets converge to an equilibrium as time approaches infinity. We show that for any operad $O$, its coproduct with $[0,\infty]$ contains the operad $W(O)$ constucted by Boardman and Vogt. To prove these results, we explicitly describe the coproduct of operads in terms of labelled trees.Comment: 48 pages, 3 figure

Partial magmatic bialgebras

A partial magmatic bialgebra, (T;S)-magmatic bialgebra where T \subset S are subsets of the set of positive integers, is a vector space endowed with an n-ary operation for each n in S and an m-ary co-operation for each m in T satisfying some compatibility and unitary relations. We prove an analogue of the Poincar\'e-Birkhoff-Witt theorem for these partial magmatic bialgebras.Comment: Revised version, after suggestions of the anonymous referee, 20 page

Long induced paths in graphs

We prove that every 3-connected planar graph on $n$ vertices contains an induced path on $\Omega(\log n)$ vertices, which is best possible and improves the best known lower bound by a multiplicative factor of $\log \log n$. We deduce that any planar graph (or more generally, any graph embeddable on a fixed surface) with a path on $n$ vertices, also contains an induced path on $\Omega(\sqrt{\log n})$ vertices. We conjecture that for any $k$, there is a contant $c(k)$ such that any $k$-degenerate graph with a path on $n$ vertices also contains an induced path on $\Omega((\log n)^{c(k)})$ vertices. We provide examples showing that this order of magnitude would be best possible (already for chordal graphs), and prove the conjecture in the case of interval graphs.Comment: 20 pages, 5 figures - revised versio