Underwater target recognition method based on t-SNE and stacked nonnegative constrained denoising autoencoder

1822-1832Underwater targets recognition is a difficult task due to the specific attributes of underwater target radiated noises, low signal to noise ratio and so on. In this paper, the input data optimization method and recognition model were researched. The underwater target radiated noise spectrum was chosen as the original feature. The t-distributed stochastic neighbor embedding (t-SNE) algorithm was used to reduce the dimensionality of the original spectrum segments divided by frequency. The optimal features can be obtained by analyzing the separability. Then the stacked nonnegative constrained denoising autoencoder (SNDAE) model was established to recognize the optimal features. The experimental signal spectra were processed by above methods. The results show that the recognition accuracy of SNDAE is higher than that of other contrastive methods. And the frequency of input band with the highest recognition accuracy is approximately the same as that with the best separability based on t-SNE, indicating that the above method can improve the recognition accuracy and efficiency

Laplacian Mixture Modeling for Network Analysis and Unsupervised Learning on Graphs

Laplacian mixture models identify overlapping regions of influence in unlabeled graph and network data in a scalable and computationally efficient way, yielding useful low-dimensional representations. By combining Laplacian eigenspace and finite mixture modeling methods, they provide probabilistic or fuzzy dimensionality reductions or domain decompositions for a variety of input data types, including mixture distributions, feature vectors, and graphs or networks. Provable optimal recovery using the algorithm is analytically shown for a nontrivial class of cluster graphs. Heuristic approximations for scalable high-performance implementations are described and empirically tested. Connections to PageRank and community detection in network analysis demonstrate the wide applicability of this approach. The origins of fuzzy spectral methods, beginning with generalized heat or diffusion equations in physics, are reviewed and summarized. Comparisons to other dimensionality reduction and clustering methods for challenging unsupervised machine learning problems are also discussed.Comment: 13 figures, 35 reference

Non-Negative Tensor Factorization Applied to Music Genre Classification

Music genre classification techniques are typically applied to the data matrix whose columns are the feature vectors extracted from music recordings. In this paper, a feature vector is extracted using a texture window of one sec, which enables the representation of any 30 sec long music recording as a time sequence of feature vectors, thus yielding a feature matrix. Consequently, by stacking the feature matrices associated to any dataset recordings, a tensor is created, a fact which necessitates studying music genre classification using tensors. First, a novel algorithm for non-negative tensor factorization (NTF) is derived that extends the non-negative matrix factorization. Several variants of the NTF algorithm emerge by employing different cost functions from the class of Bregman divergences. Second, a novel supervised NTF classifier is proposed, which trains a basis for each class separately and employs basis orthogonalization. A variety of spectral, temporal, perceptual, energy, and pitch descriptors is extracted from 1000 recordings of the GTZAN dataset, which are distributed across 10 genre classes. The NTF classifier performance is compared against that of the multilayer perceptron and the support vector machines by applying a stratified 10-fold cross validation. A genre classification accuracy of 78.9% is reported for the NTF classifier demonstrating the superiority of the aforementioned multilinear classifier over several data matrix-based state-of-the-art classifiers

A Graph-Based Semi-Supervised k Nearest-Neighbor Method for Nonlinear Manifold Distributed Data Classification

$k$ Nearest Neighbors ($k$NN) is one of the most widely used supervised learning algorithms to classify Gaussian distributed data, but it does not achieve good results when it is applied to nonlinear manifold distributed data, especially when a very limited amount of labeled samples are available. In this paper, we propose a new graph-based $k$NN algorithm which can effectively handle both Gaussian distributed data and nonlinear manifold distributed data. To achieve this goal, we first propose a constrained Tired Random Walk (TRW) by constructing an $R$-level nearest-neighbor strengthened tree over the graph, and then compute a TRW matrix for similarity measurement purposes. After this, the nearest neighbors are identified according to the TRW matrix and the class label of a query point is determined by the sum of all the TRW weights of its nearest neighbors. To deal with online situations, we also propose a new algorithm to handle sequential samples based a local neighborhood reconstruction. Comparison experiments are conducted on both synthetic data sets and real-world data sets to demonstrate the validity of the proposed new $k$NN algorithm and its improvements to other version of $k$NN algorithms. Given the widespread appearance of manifold structures in real-world problems and the popularity of the traditional $k$NN algorithm, the proposed manifold version $k$NN shows promising potential for classifying manifold-distributed data.Comment: 32 pages, 12 figures, 7 table

Innovative Algorithms and Evaluation Methods for Biological Motif Finding

Biological motifs are defined as overly recurring sub-patterns in biological systems. Sequence motifs and network motifs are the examples of biological motifs. Due to the wide range of applications, many algorithms and computational tools have been developed for efficient search for biological motifs. Therefore, there are more computationally derived motifs than experimentally validated motifs, and how to validate the biological significance of the ‘candidate motifs’ becomes an important question. Some of sequence motifs are verified by their structural similarities or their functional roles in DNA or protein sequences, and stored in databases. However, biological role of network motifs is still invalidated and currently no databases exist for this purpose. In this thesis, we focus not only on the computational efficiency but also on the biological meanings of the motifs. We provide an efficient way to incorporate biological information with clustering analysis methods: For example, a sparse nonnegative matrix factorization (SNMF) method is used with Chou-Fasman parameters for the protein motif finding. Biological network motifs are searched by various clustering algorithms with Gene ontology (GO) information. Experimental results show that the algorithms perform better than existing algorithms by producing a larger number of high-quality of biological motifs. In addition, we apply biological network motifs for the discovery of essential proteins. Essential proteins are defined as a minimum set of proteins which are vital for development to a fertile adult and in a cellular life in an organism. We design a new centrality algorithm with biological network motifs, named MCGO, and score proteins in a protein-protein interaction (PPI) network to find essential proteins. MCGO is also combined with other centrality measures to predict essential proteins using machine learning techniques. We have three contributions to the study of biological motifs through this thesis; 1) Clustering analysis is efficiently used in this work and biological information is easily integrated with the analysis; 2) We focus more on the biological meanings of motifs by adding biological knowledge in the algorithms and by suggesting biologically related evaluation methods. 3) Biological network motifs are successfully applied to a practical application of prediction of essential proteins

An Online Sparse Streaming Feature Selection Algorithm

Online streaming feature selection (OSFS), which conducts feature selection in an online manner, plays an important role in dealing with high-dimensional data. In many real applications such as intelligent healthcare platform, streaming feature always has some missing data, which raises a crucial challenge in conducting OSFS, i.e., how to establish the uncertain relationship between sparse streaming features and labels. Unfortunately, existing OSFS algorithms never consider such uncertain relationship. To fill this gap, we in this paper propose an online sparse streaming feature selection with uncertainty (OS2FSU) algorithm. OS2FSU consists of two main parts: 1) latent factor analysis is utilized to pre-estimate the missing data in sparse streaming features before con-ducting feature selection, and 2) fuzzy logic and neighborhood rough set are employed to alleviate the uncertainty between estimated streaming features and labels during conducting feature selection. In the experiments, OS2FSU is compared with five state-of-the-art OSFS algorithms on six real datasets. The results demonstrate that OS2FSU outperforms its competitors when missing data are encountered in OSFS

Adversarial Deep Network Embedding for Cross-network Node Classification

In this paper, the task of cross-network node classification, which leverages the abundant labeled nodes from a source network to help classify unlabeled nodes in a target network, is studied. The existing domain adaptation algorithms generally fail to model the network structural information, and the current network embedding models mainly focus on single-network applications. Thus, both of them cannot be directly applied to solve the cross-network node classification problem. This motivates us to propose an adversarial cross-network deep network embedding (ACDNE) model to integrate adversarial domain adaptation with deep network embedding so as to learn network-invariant node representations that can also well preserve the network structural information. In ACDNE, the deep network embedding module utilizes two feature extractors to jointly preserve attributed affinity and topological proximities between nodes. In addition, a node classifier is incorporated to make node representations label-discriminative. Moreover, an adversarial domain adaptation technique is employed to make node representations network-invariant. Extensive experimental results demonstrate that the proposed ACDNE model achieves the state-of-the-art performance in cross-network node classification