10 research outputs found

    On the Use of Imaging Spectroscopy from Unmanned Aerial Systems (UAS) to Model Yield and Assess Growth Stages of a Broadacre Crop

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    Snap bean production was valued at $363 million in 2018. Moreover, the increasing need in food production, caused by the exponential increase in population, makes this crop vitally important to study. Traditionally, harvest time determination and yield prediction are performed by collecting limited number of samples. While this approach could work, it is inaccurate, labor-intensive, and based on a small sample size. The ambiguous nature of this approach furthermore leaves the grower with under-ripe and over-mature plants, decreasing the final net profit and the overall quality of the product. A more cost-effective method would be a site-specific approach that would save time and labor for farmers and growers, while providing them with exact detail to when and where to harvest and how much is to be harvested (while forecasting yield). In this study we used hyperspectral (i.e., point-based and image-based), as well as biophysical data, to identify spectral signatures and biophysical attributes that could schedule harvest and forecast yield prior to harvest. Over the past two decades, there have been immense advances in the field of yield and harvest modeling using remote sensing data. Nevertheless, there still exists a wide gap in the literature covering yield and harvest assessment as a function of time using both ground-based and unmanned aerial systems. There is a need for a study focusing on crop-specific yield and harvest assessment using a rapid, affordable system. We hypothesize that a down-sampled multispectral system, tuned with spectral features identified from hyperspectral data, could address the mentioned gaps. Moreover, we hypothesize that the airborne data will contain noise that could negatively impact the performance and the reliability of the utilized models. Thus, We address these knowledge gaps with three objectives as below: 1. Assess yield prediction of snap bean crop using spectral and biophysical data and identify discriminating spectral features via statistical and machine learning approaches. 2. Evaluate snap bean harvest maturity at both the plant growth stage and pod maturity level, by means of spectral and biophysical indicators, and identify the corresponding discriminating spectral features. 3. Assess the feasibility of using a deep learning architecture for reducing noise in the hyperspectral data. In the light of the mentioned objectives, we carried out a greenhouse study in the winter and spring of 2019, where we studied temporal change in spectra and physical attributes of snap-bean crop, from Huntington cultivar, using a handheld spectrometer in the visible- to shortwave-infrared domain (400-2500 nm). Chapter 3 of this dissertation focuses on yield assessment of the greenhouse study. Findings from this best-case scenario yield study showed that the best time to study yield is approximately 20-25 days prior to harvest that would give out the most accurate yield predictions. The proposed approach was able to explain variability as high as R2 = 0.72, with spectral features residing in absorption regions for chlorophyll, protein, lignin, and nitrogen, among others. The captured data from this study contained minimal noise, even in the detector fall-off regions. Moving the focus to harvest maturity assessment, Chapter 4 presents findings from this objective in the greenhouse environment. Our findings showed that four stages of maturity, namely vegetative growth, budding, flowering, and pod formation, are distinguishable with 79% and 78% accuracy, respectively, via the two introduced vegetation indices, as snap-bean growth index (SGI) and normalized difference snap-bean growth index (NDSI), respectively. Moreover, pod-level maturity classification showed that ready-to-harvest and not-ready-to-harvest pods can be separated with 78% accuracy with identified wavelengths residing in green, red edge, and shortwave-infrared regions. Moreover, Chapters 5 and 6 focus on transitioning the learned concepts from the mentioned greenhouse scenario to UAS domain. We transitioned from a handheld spectrometer in the visible to short-wave infrared domain (400-2500 nm) to a UAS-mounted hyperspectral imager in the visible-to-near-infrared region (400-1000 nm). Two years worth of data, at two different geographical locations, were collected in upstate New York and examined for yield modeling and harvest scheduling objectives. For analysis of the collected data, we introduced a feature selection library in Python, named “Jostar”, to identify the most discriminating wavelengths. The findings from the yield modeling UAS study show that pod weight and seed length, as two different yield indicators, can be explained with R2 as high as 0.93 and 0.98, respectively. Identified wavelengths resided in blue, green, red, and red edge regions, and 44-55 days after planting (DAP) showed to be the optimal time for yield assessment. Chapter 6, on the other hand, evaluates maturity assessment, in terms of pod classification, from the UAS perspective. Results from this study showed that the identified features resided in blue, green, red, and red-edge regions, contributing to F1 score as high as 0.91 for differentiating between ready-to-harvest vs. not ready-to-harvest. The identified features from this study is in line with those detected from the UAS yield assessment study. In order to have a parallel comparison of the greenhouse study against the UAS study, we adopted the methodology employed for UAS studies and applied it to the greenhouse studies, in Chapter 7. Since the greenhouse data were captured in the visible-to-shortwave-infrared (400-2500 nm) domain, and the UAS study data were captured in the VNIR (400-1000 nm) domain, we truncated the spectral range of the collected data from the greenhouse study to the VNIR domain. The comparison experiment between the greenhouse study and the UAS studies for yield assessment, at two harvest stages early and late, showed that spectral features in 450-470, 500-520, 650, 700-730 nm regions were repeated on days with highest coefficient of determination. Moreover, 46-48 DAP with high coefficient of determination for yield prediction were repeated in five out of six data sets (two early stages, each three data sets). On the other hand, the harvest maturity comparison between the greenhouse study and the UAS data sets showed that similar identified wavelengths reside in ∼450, ∼530, ∼715, and ∼760 nm regions, with performance metric (F1 score) of 0.78, 0.84, and 0.9 for greenhouse, 2019 UAS, and 2020 UAS data, respectively. However, the incorporated noise in the captured data from the UAS study, along with the high computational cost of the classical mathematical approach employed for denoising hyperspectral data, have inspired us to leverage the computational performance of hyperspectral denoising by assessing the feasibility of transferring the learned concepts to deep learning models. In Chapter 8, we approached hyperspectral denoising in spectral domain (1D fashion) for two types of noise, integrated noise and non-independent and non-identically distributed (non-i.i.d.) noise. We utilized Memory Networks due to their power in image denoising for hyperspectral denoising, introduced a new loss and benchmarked it against several data sets and models. The proposed model, HypeMemNet, ranked first - up to 40% in terms of signal-to-noise ratio (SNR) for resolving integrated noise, and first or second, by a small margin for resolving non-i.i.d. noise. Our findings showed that a proper receptive field and a suitable number of filters are crucial for denoising integrated noise, while parameter size was shown to be of the highest importance for non-i.i.d. noise. Results from the conducted studies provide a comprehensive understanding encompassing yield modeling, harvest scheduling, and hyperspectral denoising. Our findings bode well for transitioning from an expensive hyperspectral imager to a multispectral imager, tuned with the identified bands, as well as employing a rapid deep learning model for hyperspectral denoising

    Cross Dynamic Range And Cross Resolution Objective Image Quality Assessment With Applications

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    In recent years, image and video signals have become an indispensable part of human life. There has been an increasing demand for high quality image and video products and services. To monitor, maintain and enhance image and video quality objective image and video quality assessment tools play crucial roles in a wide range of applications throughout the field of image and video processing, including image and video acquisition, communication, interpolation, retrieval, and displaying. A number of objective image and video quality measures have been introduced in the last decades such as mean square error (MSE), peak signal to noise ratio (PSNR), and structural similarity index (SSIM). However, they are not applicable when the dynamic range or spatial resolution of images being compared is different from that of the corresponding reference images. In this thesis, we aim to tackle these two main problems in the field of image quality assessment. Tone mapping operators (TMOs) that convert high dynamic range (HDR) to low dynamic range (LDR) images provide practically useful tools for the visualization of HDR images on standard LDR displays. Most TMOs have been designed in the absence of a well-established and subject-validated image quality assessment (IQA) model, without which fair comparisons and further improvement are difficult. We propose an objective quality assessment algorithm for tone-mapped images using HDR images as references by combining 1) a multi-scale signal fidelity measure based on a modified structural similarity (SSIM) index; and 2) a naturalness measure based on intensity statistics of natural images. To evaluate the proposed Tone-Mapped image Quality Index (TMQI), its performance in several applications and optimization problems is provided. Specifically, the main component of TMQI known as structural fidelity is modified and adopted to enhance the visualization of HDR medical images on standard displays. Moreover, a substantially different approach to design TMOs is presented, where instead of using any pre-defined systematic computational structure (such as image transformation or contrast/edge enhancement) for tone-mapping, we navigate in the space of all LDR images, searching for the image that maximizes structural fidelity or TMQI. There has been an increasing number of image interpolation and image super-resolution (SR) algorithms proposed recently to create images with higher spatial resolution from low-resolution (LR) images. However, the evaluation of such SR and interpolation algorithms is cumbersome. Most existing image quality measures are not applicable because LR and resultant high resolution (HR) images have different spatial resolutions. We make one of the first attempts to develop objective quality assessment methods to compare LR and HR images. Our method adopts a framework based on natural scene statistics (NSS) where image quality degradation is gauged by the deviation of its statistical features from NSS models trained upon high quality natural images. In particular, we extract frequency energy falloff, dominant orientation and spatial continuity statistics from natural images and build statistical models to describe such statistics. These models are then used to measure statistical naturalness of interpolated images. We carried out subjective tests to validate our approach, which also demonstrates promising results. The performance of the proposed measure is further evaluated when applied to parameter tuning in image interpolation algorithms

    Recent Advances in Signal Processing

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    The signal processing task is a very critical issue in the majority of new technological inventions and challenges in a variety of applications in both science and engineering fields. Classical signal processing techniques have largely worked with mathematical models that are linear, local, stationary, and Gaussian. They have always favored closed-form tractability over real-world accuracy. These constraints were imposed by the lack of powerful computing tools. During the last few decades, signal processing theories, developments, and applications have matured rapidly and now include tools from many areas of mathematics, computer science, physics, and engineering. This book is targeted primarily toward both students and researchers who want to be exposed to a wide variety of signal processing techniques and algorithms. It includes 27 chapters that can be categorized into five different areas depending on the application at hand. These five categories are ordered to address image processing, speech processing, communication systems, time-series analysis, and educational packages respectively. The book has the advantage of providing a collection of applications that are completely independent and self-contained; thus, the interested reader can choose any chapter and skip to another without losing continuity

    BagStack Classification for Data Imbalance Problems with Application to Defect Detection and Labeling in Semiconductor Units

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    abstract: Despite the fact that machine learning supports the development of computer vision applications by shortening the development cycle, finding a general learning algorithm that solves a wide range of applications is still bounded by the ”no free lunch theorem”. The search for the right algorithm to solve a specific problem is driven by the problem itself, the data availability and many other requirements. Automated visual inspection (AVI) systems represent a major part of these challenging computer vision applications. They are gaining growing interest in the manufacturing industry to detect defective products and keep these from reaching customers. The process of defect detection and classification in semiconductor units is challenging due to different acceptable variations that the manufacturing process introduces. Other variations are also typically introduced when using optical inspection systems due to changes in lighting conditions and misalignment of the imaged units, which makes the defect detection process more challenging. In this thesis, a BagStack classification framework is proposed, which makes use of stacking and bagging concepts to handle both variance and bias errors. The classifier is designed to handle the data imbalance and overfitting problems by adaptively transforming the multi-class classification problem into multiple binary classification problems, applying a bagging approach to train a set of base learners for each specific problem, adaptively specifying the number of base learners assigned to each problem, adaptively specifying the number of samples to use from each class, applying a novel data-imbalance aware cross-validation technique to generate the meta-data while taking into account the data imbalance problem at the meta-data level and, finally, using a multi-response random forest regression classifier as a meta-classifier. The BagStack classifier makes use of multiple features to solve the defect classification problem. In order to detect defects, a locally adaptive statistical background modeling is proposed. The proposed BagStack classifier outperforms state-of-the-art image classification techniques on our dataset in terms of overall classification accuracy and average per-class classification accuracy. The proposed detection method achieves high performance on the considered dataset in terms of recall and precision.Dissertation/ThesisDoctoral Dissertation Computer Engineering 201

    Gaze-Based Human-Robot Interaction by the Brunswick Model

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    We present a new paradigm for human-robot interaction based on social signal processing, and in particular on the Brunswick model. Originally, the Brunswick model copes with face-to-face dyadic interaction, assuming that the interactants are communicating through a continuous exchange of non verbal social signals, in addition to the spoken messages. Social signals have to be interpreted, thanks to a proper recognition phase that considers visual and audio information. The Brunswick model allows to quantitatively evaluate the quality of the interaction using statistical tools which measure how effective is the recognition phase. In this paper we cast this theory when one of the interactants is a robot; in this case, the recognition phase performed by the robot and the human have to be revised w.r.t. the original model. The model is applied to Berrick, a recent open-source low-cost robotic head platform, where the gazing is the social signal to be considered

    Surface analysis and visualization from multi-light image collections

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    Multi-Light Image Collections (MLICs) are stacks of photos of a scene acquired with a fixed viewpoint and a varying surface illumination that provides large amounts of visual and geometric information. Over the last decades, a wide variety of methods have been devised to extract information from MLICs and have shown its use in different application domains to support daily activities. In this thesis, we present methods that leverage a MLICs for surface analysis and visualization. First, we provide background information: acquisition setup, light calibration and application areas where MLICs have been successfully used for the research of daily analysis work. Following, we discuss the use of MLIC for surface visualization and analysis and available tools used to support the analysis. Here, we discuss methods that strive to support the direct exploration of the captured MLIC, methods that generate relightable models from MLIC, non-photorealistic visualization methods that rely on MLIC, methods that estimate normal map from MLIC and we point out visualization tools used to do MLIC analysis. In chapter 3 we propose novel benchmark datasets (RealRTI, SynthRTI and SynthPS) that can be used to evaluate algorithms that rely on MLIC and discusses available benchmark for validation of photometric algorithms that can be also used to validate other MLIC-based algorithms. In chapter 4, we evaluate the performance of different photometric stereo algorithms using SynthPS for cultural heritage applications. RealRTI and SynthRTI have been used to evaluate the performance of (Neural)RTI method. Then, in chapter 5, we present a neural network-based RTI method, aka NeuralRTI, a framework for pixel-based encoding and relighting of RTI data. In this method using a simple autoencoder architecture, we show that it is possible to obtain a highly compressed representation that better preserves the original information and provides increased quality of virtual images relighted from novel directions, particularly in the case of challenging glossy materials. Finally, in chapter 6, we present a method for the detection of crack on the surface of paintings from multi-light image acquisitions and that can be used as well on single images and conclude our presentation

    A Study of the Structural Similarity Image Quality Measure with Applications to Image Processing

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    Since its introduction in 2004, the Structural Similarity (SSIM) index has gained widespread popularity as an image quality assessment measure. SSIM is currently recognized to be one of the most powerful methods of assessing the visual closeness of images. That being said, the Mean Squared Error (MSE), which performs very poorly from a perceptual point of view, still remains the most common optimization criterion in image processing applications because of its relative simplicity along with a number of other properties that are deemed important. In this thesis, some necessary tools to assist in the design of SSIM-optimal algorithms are developed. This work combines theoretical developments with experimental research and practical algorithms. The description of the mathematical properties of the SSIM index represents the principal theoretical achievement in this thesis. Indeed, it is demonstrated how the SSIM index can be transformed into a distance metric. Local convexity, quasi-convexity, symmetries and invariance properties are also proved. The study of the SSIM index is also generalized to a family of metrics called normalized (or M-relative) metrics. Various analytical techniques for different kinds of SSIM-based optimization are then devised. For example, the best approximation according to the SSIM is described for orthogonal and redundant basis sets. SSIM-geodesic paths with arclength parameterization are also traced between images. Finally, formulas for SSIM-optimal point estimators are obtained. On the experimental side of the research, the structural self-similarity of images is studied. This leads to the confirmation of the hypothesis that the main source of self-similarity of images lies in their regions of low variance. On the practical side, an implementation of local statistical tests on the image residual is proposed for the assessment of denoised images. Also, heuristic estimations of the SSIM index and the MSE are developed. The research performed in this thesis should lead to the development of state-of-the-art image denoising algorithms. A better comprehension of the mathematical properties of the SSIM index represents another step toward the replacement of the MSE with SSIM in image processing applications

    SSIM-Inspired Quality Assessment, Compression, and Processing for Visual Communications

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    Objective Image and Video Quality Assessment (I/VQA) measures predict image/video quality as perceived by human beings - the ultimate consumers of visual data. Existing research in the area is mainly limited to benchmarking and monitoring of visual data. The use of I/VQA measures in the design and optimization of image/video processing algorithms and systems is more desirable, challenging and fruitful but has not been well explored. Among the recently proposed objective I/VQA approaches, the structural similarity (SSIM) index and its variants have emerged as promising measures that show superior performance as compared to the widely used mean squared error (MSE) and are computationally simple compared with other state-of-the-art perceptual quality measures. In addition, SSIM has a number of desirable mathematical properties for optimization tasks. The goal of this research is to break the tradition of using MSE as the optimization criterion for image and video processing algorithms. We tackle several important problems in visual communication applications by exploiting SSIM-inspired design and optimization to achieve significantly better performance. Firstly, the original SSIM is a Full-Reference IQA (FR-IQA) measure that requires access to the original reference image, making it impractical in many visual communication applications. We propose a general purpose Reduced-Reference IQA (RR-IQA) method that can estimate SSIM with high accuracy with the help of a small number of RR features extracted from the original image. Furthermore, we introduce and demonstrate the novel idea of partially repairing an image using RR features. Secondly, image processing algorithms such as image de-noising and image super-resolution are required at various stages of visual communication systems, starting from image acquisition to image display at the receiver. We incorporate SSIM into the framework of sparse signal representation and non-local means methods and demonstrate improved performance in image de-noising and super-resolution. Thirdly, we incorporate SSIM into the framework of perceptual video compression. We propose an SSIM-based rate-distortion optimization scheme and an SSIM-inspired divisive optimization method that transforms the DCT domain frame residuals to a perceptually uniform space. Both approaches demonstrate the potential to largely improve the rate-distortion performance of state-of-the-art video codecs. Finally, in real-world visual communications, it is a common experience that end-users receive video with significantly time-varying quality due to the variations in video content/complexity, codec configuration, and network conditions. How human visual quality of experience (QoE) changes with such time-varying video quality is not yet well-understood. We propose a quality adaptation model that is asymmetrically tuned to increasing and decreasing quality. The model improves upon the direct SSIM approach in predicting subjective perceptual experience of time-varying video quality
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