6,857 research outputs found
Expectation Propagation for Poisson Data
The Poisson distribution arises naturally when dealing with data involving
counts, and it has found many applications in inverse problems and imaging. In
this work, we develop an approximate Bayesian inference technique based on
expectation propagation for approximating the posterior distribution formed
from the Poisson likelihood function and a Laplace type prior distribution,
e.g., the anisotropic total variation prior. The approach iteratively yields a
Gaussian approximation, and at each iteration, it updates the Gaussian
approximation to one factor of the posterior distribution by moment matching.
We derive explicit update formulas in terms of one-dimensional integrals, and
also discuss stable and efficient quadrature rules for evaluating these
integrals. The method is showcased on two-dimensional PET images.Comment: 25 pages, to be published at Inverse Problem
A Framework for Directional and Higher-Order Reconstruction in Photoacoustic Tomography
Photoacoustic tomography is a hybrid imaging technique that combines high
optical tissue contrast with high ultrasound resolution. Direct reconstruction
methods such as filtered backprojection, time reversal and least squares suffer
from curved line artefacts and blurring, especially in case of limited angles
or strong noise. In recent years, there has been great interest in regularised
iterative methods. These methods employ prior knowledge on the image to provide
higher quality reconstructions. However, easy comparisons between regularisers
and their properties are limited, since many tomography implementations heavily
rely on the specific regulariser chosen. To overcome this bottleneck, we
present a modular reconstruction framework for photoacoustic tomography. It
enables easy comparisons between regularisers with different properties, e.g.
nonlinear, higher-order or directional. We solve the underlying minimisation
problem with an efficient first-order primal-dual algorithm. Convergence rates
are optimised by choosing an operator dependent preconditioning strategy. Our
reconstruction methods are tested on challenging 2D synthetic and experimental
data sets. They outperform direct reconstruction approaches for strong noise
levels and limited angle measurements, offering immediate benefits in terms of
acquisition time and quality. This work provides a basic platform for the
investigation of future advanced regularisation methods in photoacoustic
tomography.Comment: submitted to "Physics in Medicine and Biology". Changes from v1 to
v2: regularisation with directional wavelet has been added; new experimental
tests have been include
Discrete Geometric Structures in Homogenization and Inverse Homogenization with application to EIT
We introduce a new geometric approach for the homogenization and inverse
homogenization of the divergence form elliptic operator with rough conductivity
coefficients in dimension two. We show that conductivity
coefficients are in one-to-one correspondence with divergence-free matrices and
convex functions over the domain . Although homogenization is a
non-linear and non-injective operator when applied directly to conductivity
coefficients, homogenization becomes a linear interpolation operator over
triangulations of when re-expressed using convex functions, and is a
volume averaging operator when re-expressed with divergence-free matrices.
Using optimal weighted Delaunay triangulations for linearly interpolating
convex functions, we obtain an optimally robust homogenization algorithm for
arbitrary rough coefficients. Next, we consider inverse homogenization and show
how to decompose it into a linear ill-posed problem and a well-posed non-linear
problem. We apply this new geometric approach to Electrical Impedance
Tomography (EIT). It is known that the EIT problem admits at most one isotropic
solution. If an isotropic solution exists, we show how to compute it from any
conductivity having the same boundary Dirichlet-to-Neumann map. It is known
that the EIT problem admits a unique (stable with respect to -convergence)
solution in the space of divergence-free matrices. As such we suggest that the
space of convex functions is the natural space in which to parameterize
solutions of the EIT problem
Quantitative Susceptibility Mapping: Contrast Mechanisms and Clinical Applications.
Quantitative susceptibility mapping (QSM) is a recently developed MRI technique for quantifying the spatial distribution of magnetic susceptibility within biological tissues. It first uses the frequency shift in the MRI signal to map the magnetic field profile within the tissue. The resulting field map is then used to determine the spatial distribution of the underlying magnetic susceptibility by solving an inverse problem. The solution is achieved by deconvolving the field map with a dipole field, under the assumption that the magnetic field is a result of the superposition of the dipole fields generated by all voxels and that each voxel has its unique magnetic susceptibility. QSM provides improved contrast to noise ratio for certain tissues and structures compared to its magnitude counterpart. More importantly, magnetic susceptibility is a direct reflection of the molecular composition and cellular architecture of the tissue. Consequently, by quantifying magnetic susceptibility, QSM is becoming a quantitative imaging approach for characterizing normal and pathological tissue properties. This article reviews the mechanism generating susceptibility contrast within tissues and some associated applications
Inherited crustal deformation along the East Gondwana margin revealed by seismic anisotropy tomography
Acknowledgments We thank Mallory Young for providing phase velocity measurements in mainland Australia and Tasmania. Robert Musgrave is thanked for making available his tilt-filtered magnetic intensity map. In the short term, data may be made available by contacting the authors (S.P. or N.R.). A new database of passive seismic data recorded in Australia is planned as part of a national geophysics data facility for easy access download. Details on the status of this database may be obtained from the authors (S.P., N.R., or A.M.R.). There are no restrictions on access for noncommercial use. Commercial users should seek written permission from the authors (S.P. or N.R.). Ross Cayley publishes with the permission of the Director of the Geological Survey of Victoria.Peer reviewedPublisher PD
Iterative CT reconstruction from few projections for the nondestructive post irradiation examination of nuclear fuel assemblies
The core components (e.g. fuel assemblies, spacer grids, control rods) of the nuclear reactors encounter harsh environment due to high temperature, physical stress, and a tremendous level of radiation. The integrity of these elements is crucial for safe operation of the nuclear power plants. The Post Irradiation Examination (PIE) can reveal information about the integrity of the elements during normal operations and offânormal events. Computed tomography (CT) is a tool for evaluating the structural integrity of elements non-destructively. CT requires many projections to be acquired from different view angles after which a mathematical algorithm is adopted for reconstruction. Obtaining many projections is laborious and expensive in nuclear industries. Reconstructions from a small number of projections are explored to achieve faster and cost-efficient PIE. Classical reconstruction algorithms (e.g. filtered back projection) cannot offer stable reconstructions from few projections and create severe streaking artifacts. In this thesis, conventional algorithms are reviewed, and new algorithms are developed for reconstructions of the nuclear fuel assemblies using few projections. CT reconstruction from few projections falls into two categories: the sparse-view CT and the limited-angle CT or tomosynthesis. Iterative reconstruction algorithms are developed for both cases in the field of compressed sensing (CS). The performance of the algorithms is assessed using simulated projections and validated through real projections. The thesis also describes the systematic strategy towards establishing the conditions of reconstructions and finds the optimal imaging parameters for reconstructions of the fuel assemblies from few projections. --Abstract, page iii
Joint Reconstruction of Multi-channel, Spectral CT Data via Constrained Total Nuclear Variation Minimization
We explore the use of the recently proposed "total nuclear variation" (TNV)
as a regularizer for reconstructing multi-channel, spectral CT images. This
convex penalty is a natural extension of the total variation (TV) to
vector-valued images and has the advantage of encouraging common edge locations
and a shared gradient direction among image channels. We show how it can be
incorporated into a general, data-constrained reconstruction framework and
derive update equations based on the first-order, primal-dual algorithm of
Chambolle and Pock. Early simulation studies based on the numerical XCAT
phantom indicate that the inter-channel coupling introduced by the TNV leads to
better preservation of image features at high levels of regularization,
compared to independent, channel-by-channel TV reconstructions.Comment: Submitted to Physics in Medicine and Biolog
Quantitative characterization of pore structure of several biochars with 3D imaging
Pore space characteristics of biochars may vary depending on the used raw
material and processing technology. Pore structure has significant effects on
the water retention properties of biochar amended soils. In this work, several
biochars were characterized with three-dimensional imaging and image analysis.
X-ray computed microtomography was used to image biochars at resolution of 1.14
m and the obtained images were analysed for porosity, pore-size
distribution, specific surface area and structural anisotropy. In addition,
random walk simulations were used to relate structural anisotropy to diffusive
transport. Image analysis showed that considerable part of the biochar volume
consist of pores in size range relevant to hydrological processes and storage
of plant available water. Porosity and pore-size distribution were found to
depend on the biochar type and the structural anisotopy analysis showed that
used raw material considerably affects the pore characteristics at micrometre
scale. Therefore attention should be paid to raw material selection and quality
in applications requiring optimized pore structure.Comment: 16 pages, 4 figures. The final publication is available at Springer
via http://dx.doi.org/10.1007/s11356-017-8823-
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