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Static/Dynamic Filtering for Mesh Geometry
The joint bilateral filter, which enables feature-preserving signal smoothing
according to the structural information from a guidance, has been applied for
various tasks in geometry processing. Existing methods either rely on a static
guidance that may be inconsistent with the input and lead to unsatisfactory
results, or a dynamic guidance that is automatically updated but sensitive to
noises and outliers. Inspired by recent advances in image filtering, we propose
a new geometry filtering technique called static/dynamic filter, which utilizes
both static and dynamic guidances to achieve state-of-the-art results. The
proposed filter is based on a nonlinear optimization that enforces smoothness
of the signal while preserving variations that correspond to features of
certain scales. We develop an efficient iterative solver for the problem, which
unifies existing filters that are based on static or dynamic guidances. The
filter can be applied to mesh face normals followed by vertex position update,
to achieve scale-aware and feature-preserving filtering of mesh geometry. It
also works well for other types of signals defined on mesh surfaces, such as
texture colors. Extensive experimental results demonstrate the effectiveness of
the proposed filter for various geometry processing applications such as mesh
denoising, geometry feature enhancement, and texture color filtering
3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries
Recent advances in electron microscopy have enabled the imaging of single
cells in 3D at nanometer length scale resolutions. An uncharted frontier for in
silico biology is the ability to simulate cellular processes using these
observed geometries. Enabling such simulations requires watertight meshing of
electron micrograph images into 3D volume meshes, which can then form the basis
of computer simulations of such processes using numerical techniques such as
the Finite Element Method. In this paper, we describe the use of our recently
rewritten mesh processing software, GAMer 2, to bridge the gap between poorly
conditioned meshes generated from segmented micrographs and boundary marked
tetrahedral meshes which are compatible with simulation. We demonstrate the
application of a workflow using GAMer 2 to a series of electron micrographs of
neuronal dendrite morphology explored at three different length scales and show
that the resulting meshes are suitable for finite element simulations. This
work is an important step towards making physical simulations of biological
processes in realistic geometries routine. Innovations in algorithms to
reconstruct and simulate cellular length scale phenomena based on emerging
structural data will enable realistic physical models and advance discovery at
the interface of geometry and cellular processes. We posit that a new frontier
at the intersection of computational technologies and single cell biology is
now open.Comment: 39 pages, 14 figures. High resolution figures and supplemental movies
available upon reques
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