5,118 research outputs found
Unfolding the Sulcus
Sulci are localized furrows on the surface of soft materials that form by a
compression-induced instability. We unfold this instability by breaking its
natural scale and translation invariance, and compute a limiting bifurcation
diagram for sulcfication showing that it is a scale-free, sub-critical {\em
nonlinear} instability. In contrast with classical nucleation, sulcification is
{\em continuous}, occurs in purely elastic continua and is structurally stable
in the limit of vanishing surface energy. During loading, a sulcus nucleates at
a point with an upper critical strain and an essential singularity in the
linearized spectrum. On unloading, it quasi-statically shrinks to a point with
a lower critical strain, explained by breaking of scale symmetry. At
intermediate strains the system is linearly stable but nonlinearly unstable
with {\em no} energy barrier. Simple experiments confirm the existence of these
two critical strains.Comment: Main text with supporting appendix. Revised to agree with published
version. New result in the Supplementary Informatio
pde2path - A Matlab package for continuation and bifurcation in 2D elliptic systems
pde2path is a free and easy to use Matlab continuation/bifurcation package
for elliptic systems of PDEs with arbitrary many components, on general two
dimensional domains, and with rather general boundary conditions. The package
is based on the FEM of the Matlab pdetoolbox, and is explained by a number of
examples, including Bratu's problem, the Schnakenberg model, Rayleigh-Benard
convection, and von Karman plate equations. These serve as templates to study
new problems, for which the user has to provide, via Matlab function files, a
description of the geometry, the boundary conditions, the coefficients of the
PDE, and a rough initial guess of a solution. The basic algorithm is a one
parameter arclength continuation with optional bifurcation detection and
branch-switching. Stability calculations, error control and mesh-handling, and
some elementary time-integration for the associated parabolic problem are also
supported. The continuation, branch-switching, plotting etc are performed via
Matlab command-line function calls guided by the AUTO style. The software can
be downloaded from www.staff.uni-oldenburg.de/hannes.uecker/pde2path, where
also an online documentation of the software is provided such that in this
paper we focus more on the mathematics and the example systems
Distributed-memory large deformation diffeomorphic 3D image registration
We present a parallel distributed-memory algorithm for large deformation
diffeomorphic registration of volumetric images that produces large isochoric
deformations (locally volume preserving). Image registration is a key
technology in medical image analysis. Our algorithm uses a partial differential
equation constrained optimal control formulation. Finding the optimal
deformation map requires the solution of a highly nonlinear problem that
involves pseudo-differential operators, biharmonic operators, and pure
advection operators both forward and back- ward in time. A key issue is the
time to solution, which poses the demand for efficient optimization methods as
well as an effective utilization of high performance computing resources. To
address this problem we use a preconditioned, inexact, Gauss-Newton- Krylov
solver. Our algorithm integrates several components: a spectral discretization
in space, a semi-Lagrangian formulation in time, analytic adjoints, different
regularization functionals (including volume-preserving ones), a spectral
preconditioner, a highly optimized distributed Fast Fourier Transform, and a
cubic interpolation scheme for the semi-Lagrangian time-stepping. We
demonstrate the scalability of our algorithm on images with resolution of up to
on the "Maverick" and "Stampede" systems at the Texas Advanced
Computing Center (TACC). The critical problem in the medical imaging
application domain is strong scaling, that is, solving registration problems of
a moderate size of ---a typical resolution for medical images. We are
able to solve the registration problem for images of this size in less than
five seconds on 64 x86 nodes of TACC's "Maverick" system.Comment: accepted for publication at SC16 in Salt Lake City, Utah, USA;
November 201
- …