Classification of breast tissue in mammograms using efficient coding

<p>Abstract</p> <p>Background</p> <p>Female breast cancer is the major cause of death by cancer in western countries. Efforts in Computer Vision have been made in order to improve the diagnostic accuracy by radiologists. Some methods of lesion diagnosis in mammogram images were developed based in the technique of principal component analysis which has been used in efficient coding of signals and 2D Gabor wavelets used for computer vision applications and modeling biological vision.</p> <p>Methods</p> <p>In this work, we present a methodology that uses efficient coding along with linear discriminant analysis to distinguish between mass and non-mass from 5090 region of interest from mammograms.</p> <p>Results</p> <p>The results show that the best rates of success reached with Gabor wavelets and principal component analysis were 85.28% and 87.28%, respectively. In comparison, the model of efficient coding presented here reached up to 90.07%.</p> <p>Conclusions</p> <p>Altogether, the results presented demonstrate that independent component analysis performed successfully the efficient coding in order to discriminate mass from non-mass tissues. In addition, we have observed that LDA with ICA bases showed high predictive performance for some datasets and thus provide significant support for a more detailed clinical investigation.</p

Cancer diagnosis using deep learning: A bibliographic review

In this paper, we first describe the basics of the field of cancer diagnosis, which includes steps of cancer diagnosis followed by the typical classification methods used by doctors, providing a historical idea of cancer classification techniques to the readers. These methods include Asymmetry, Border, Color and Diameter (ABCD) method, seven-point detection method, Menzies method, and pattern analysis. They are used regularly by doctors for cancer diagnosis, although they are not considered very efficient for obtaining better performance. Moreover, considering all types of audience, the basic evaluation criteria are also discussed. The criteria include the receiver operating characteristic curve (ROC curve), Area under the ROC curve (AUC), F1 score, accuracy, specificity, sensitivity, precision, dice-coefficient, average accuracy, and Jaccard index. Previously used methods are considered inefficient, asking for better and smarter methods for cancer diagnosis. Artificial intelligence and cancer diagnosis are gaining attention as a way to define better diagnostic tools. In particular, deep neural networks can be successfully used for intelligent image analysis. The basic framework of how this machine learning works on medical imaging is provided in this study, i.e., pre-processing, image segmentation and post-processing. The second part of this manuscript describes the different deep learning techniques, such as convolutional neural networks (CNNs), generative adversarial models (GANs), deep autoencoders (DANs), restricted Boltzmann’s machine (RBM), stacked autoencoders (SAE), convolutional autoencoders (CAE), recurrent neural networks (RNNs), long short-term memory (LTSM), multi-scale convolutional neural network (M-CNN), multi-instance learning convolutional neural network (MIL-CNN). For each technique, we provide Python codes, to allow interested readers to experiment with the cited algorithms on their own diagnostic problems. The third part of this manuscript compiles the successfully applied deep learning models for different types of cancers. Considering the length of the manuscript, we restrict ourselves to the discussion of breast cancer, lung cancer, brain cancer, and skin cancer. The purpose of this bibliographic review is to provide researchers opting to work in implementing deep learning and artificial neural networks for cancer diagnosis a knowledge from scratch of the state-of-the-art achievements

Medical imaging analysis with artificial neural networks

Given that neural networks have been widely reported in the research community of medical imaging, we provide a focused literature survey on recent neural network developments in computer-aided diagnosis, medical image segmentation and edge detection towards visual content analysis, and medical image registration for its pre-processing and post-processing, with the aims of increasing awareness of how neural networks can be applied to these areas and to provide a foundation for further research and practical development. Representative techniques and algorithms are explained in detail to provide inspiring examples illustrating: (i) how a known neural network with fixed structure and training procedure could be applied to resolve a medical imaging problem; (ii) how medical images could be analysed, processed, and characterised by neural networks; and (iii) how neural networks could be expanded further to resolve problems relevant to medical imaging. In the concluding section, a highlight of comparisons among many neural network applications is included to provide a global view on computational intelligence with neural networks in medical imaging

Computer-aided detection and diagnosis of breast cancer in 2D and 3D medical imaging through multifractal analysis

This Thesis describes the research work performed in the scope of a doctoral research program and presents its conclusions and contributions. The research activities were carried on in the industry with Siemens S.A. Healthcare Sector, in integration with a research team. Siemens S.A. Healthcare Sector is one of the world biggest suppliers of products, services and complete solutions in the medical sector. The company offers a wide selection of diagnostic and therapeutic equipment and information systems. Siemens products for medical imaging and in vivo diagnostics include: ultrasound, computer tomography, mammography, digital breast tomosynthesis, magnetic resonance, equipment to angiography and coronary angiography, nuclear imaging, and many others. Siemens has a vast experience in Healthcare and at the beginning of this project it was strategically interested in solutions to improve the detection of Breast Cancer, to increase its competitiveness in the sector. The company owns several patents related with self-similarity analysis, which formed the background of this Thesis. Furthermore, Siemens intended to explore commercially the computer- aided automatic detection and diagnosis eld for portfolio integration. Therefore, with the high knowledge acquired by University of Beira Interior in this area together with this Thesis, will allow Siemens to apply the most recent scienti c progress in the detection of the breast cancer, and it is foreseeable that together we can develop a new technology with high potential. The project resulted in the submission of two invention disclosures for evaluation in Siemens A.G., two articles published in peer-reviewed journals indexed in ISI Science Citation Index, two other articles submitted in peer-reviewed journals, and several international conference papers. This work on computer-aided-diagnosis in breast led to innovative software and novel processes of research and development, for which the project received the Siemens Innovation Award in 2012. It was very rewarding to carry on such technological and innovative project in a socially sensitive area as Breast Cancer.No cancro da mama a deteção precoce e o diagnóstico correto são de extrema importância na prescrição terapêutica e caz e e ciente, que potencie o aumento da taxa de sobrevivência à doença. A teoria multifractal foi inicialmente introduzida no contexto da análise de sinal e a sua utilidade foi demonstrada na descrição de comportamentos siológicos de bio-sinais e até na deteção e predição de patologias. Nesta Tese, três métodos multifractais foram estendidos para imagens bi-dimensionais (2D) e comparados na deteção de microcalci cações em mamogramas. Um destes métodos foi também adaptado para a classi cação de massas da mama, em cortes transversais 2D obtidos por ressonância magnética (RM) de mama, em grupos de massas provavelmente benignas e com suspeição de malignidade. Um novo método de análise multifractal usando a lacunaridade tri-dimensional (3D) foi proposto para classi cação de massas da mama em imagens volumétricas 3D de RM de mama. A análise multifractal revelou diferenças na complexidade subjacente às localizações das microcalci cações em relação aos tecidos normais, permitindo uma boa exatidão da sua deteção em mamogramas. Adicionalmente, foram extraídas por análise multifractal características dos tecidos que permitiram identi car os casos tipicamente recomendados para biópsia em imagens 2D de RM de mama. A análise multifractal 3D foi e caz na classi cação de lesões mamárias benignas e malignas em imagens 3D de RM de mama. Este método foi mais exato para esta classi cação do que o método 2D ou o método padrão de análise de contraste cinético tumoral. Em conclusão, a análise multifractal fornece informação útil para deteção auxiliada por computador em mamogra a e diagnóstico auxiliado por computador em imagens 2D e 3D de RM de mama, tendo o potencial de complementar a interpretação dos radiologistas

Mammography

In this volume, the topics are constructed from a variety of contents: the bases of mammography systems, optimization of screening mammography with reference to evidence-based research, new technologies of image acquisition and its surrounding systems, and case reports with reference to up-to-date multimodality images of breast cancer. Mammography has been lagged in the transition to digital imaging systems because of the necessity of high resolution for diagnosis. However, in the past ten years, technical improvement has resolved the difficulties and boosted new diagnostic systems. We hope that the reader will learn the essentials of mammography and will be forward-looking for the new technologies. We want to express our sincere gratitude and appreciation?to all the co-authors who have contributed their work to this volume

Artificial neural network and its applications in quality process control, document recognition and biomedical imaging

In computer-vision based system a digital image obtained by a digital camera would usually have 24-bit color image. The analysis of an image with that many levels might require complicated image processing techniques and higher computational costs. But in real-time application, where a part has to be inspected within a few milliseconds, either we have to reduce the image to a more manageable number of gray levels, usually two levels (binary image), and at the same time retain all necessary features of the original image or develop a complicated technique. A binary image can be obtained by thresholding the original image into two levels. Therefore, thresholding of a given image into binary image is a necessary step for most image analysis and recognition techniques. In this thesis, we have studied the effectiveness of using artificial neural network (ANN) in pharmaceutical, document recognition and biomedical imaging applications for image thresholding and classification purposes. Finally, we have developed edge-based, ANN-based and region-growing based image thresholding techniques to extract low contrast objects of interest and classify them into respective classes in those applications. Real-time quality inspection of gelatin capsules in pharmaceutical applications is an important issue from the point of view of industry\u27s productivity and competitiveness. Computer vision-based automatic quality inspection and controller system is one of the solutions to this problem. Machine vision systems provide quality control and real-time feedback for industrial processes, overcoming physical limitations and subjective judgment of humans. In this thesis, we have developed an image processing system using edge-based image thresholding techniques for quality inspection that satisfy the industrial requirements in pharmaceutical applications to pass the accepted and rejected capsules. In document recognition application, success of OCR mostly depends on the quality of the thresholded image. Non-uniform illumination, low contrast and complex background make it challenging in this application. In this thesis, optimal parameters for ANN-based local thresholding approach for gray scale composite document image with non-uniform background is proposed. An exhaustive search was conducted to select the optimal features and found that pixel value, mean and entropy are the most significant features at window size 3x3 in this application. For other applications, it might be different, but the procedure to find the optimal parameters is same. The average recognition rate 99.25% shows that the proposed 3 features at window size 3x3 are optimal in terms of recognition rate and PSNR compare to the ANN-based thresholding technique with different parameters presented in the literature. In biomedical imaging application, breast cancer continues to be a public health problem. In this thesis we presented a computer aided diagnosis (CAD) system for mass detection and classification in digitized mammograms, which performs mass detection on regions of interest (ROI) followed by the benign-malignant classification on detected masses. Three layers ANN with seven features is proposed for classifying the marked regions into benign and malignant and 90.91% sensitivity and 83.87% specificity is achieved that is very much promising compare to the radiologist\u27s sensitivity 75%

Effects of discrete wavelet compression on automated mammographic shape recognition

At present early detection is critical for the cure of breast cancer. Mammography is a breast screening technique which can detect breast cancer at the earliest possible stage. Mammographic lesions are typically classified into three shape classes, namely round, nodular and stellate. Presently this classification is done by experienced radiologists. In order to increase the speed and decrease the cost of diagnosis, automated recognition systems are being developed. This study analyses an automated classification procedure and its sensitivity to wavelet based image compression; In this study, the mammographic shape images are compressed using discrete wavelet compression and then classified using statistical classification methods. First, one dimensional compression is done on the radial distance measure and the shape features are extracted. Second, linear discriminant analysis is used to compute the weightings of the features. Third, a minimum distance Euclidean classifier and the leave-one-out test method is used for classification. Lastly, a two dimensional compression is performed on the images, and the above process of feature extraction and classification is repeated. The results are compared with those obtained with uncompressed mammographic images

Hybrid Region-based Image Compression Scheme for Mamograms and Ultrasound Images

The need for transmission and archive of mammograms and ultrasound Images has dramatically increased in tele-healthcare applications. Such images require large amount of' storage space which affect transmission speed. Therefore an effective compression scheme is essential. Compression of these images. in general. laces a great challenge to compromise between the higher compression ratio and the relevant diagnostic information. Out of the many studied compression schemes. lossless . IPl. (i- LS and lossy SPII IT are found to he the most efficient ones. JPEG-LS and SI'll IT are chosen based on a comprehensive experimental study carried on a large number of mammograms and ultrasound images of different sizes and texture. The lossless schemes are evaluated based on the compression ratio and compression speed. The distortion in the image quality which is introduced by lossy methods evaluated based on objective criteria using Mean Square Error (MSE) and Peak signal to Noise Ratio (PSNR). It is found that lossless compression can achieve a modest compression ratio 2: 1 - 4: 1. bossy compression schemes can achieve higher compression ratios than lossless ones but at the price of the image quality which may impede diagnostic conclusions. In this work, a new compression approach called Ilvbrid Region-based Image Compression Scheme (IIYRICS) has been proposed for the mammograms and ultrasound images to achieve higher compression ratios without compromising the diagnostic quality. In I LYRICS, a modification for JPI; G-LS is introduced to encode the arbitrary shaped disease affected regions. Then Shape adaptive SPIT IT is applied on the remaining non region of interest. The results clearly show that this hybrid strategy can yield high compression ratios with perfect reconstruction of diagnostic relevant regions, achieving high speed transmission and less storage requirement. For the sample images considered in our experiment, the compression ratio increases approximately ten times. However, this increase depends upon the size of the region of interest chosen. It is also föund that the pre-processing (contrast stretching) of region of interest improves compression ratios on mammograms but not on ultrasound images