Algorithmic Based Fault Tolerance Applied to High Performance Computing

We present a new approach to fault tolerance for High Performance Computing system. Our approach is based on a careful adaptation of the Algorithmic Based Fault Tolerance technique (Huang and Abraham, 1984) to the need of parallel distributed computation. We obtain a strongly scalable mechanism for fault tolerance. We can also detect and correct errors (bit-flip) on the fly of a computation. To assess the viability of our approach, we have developed a fault tolerant matrix-matrix multiplication subroutine and we propose some models to predict its running time. Our parallel fault-tolerant matrix-matrix multiplication scores 1.4 TFLOPS on 484 processors (cluster jacquard.nersc.gov) and returns a correct result while one process failure has happened. This represents 65% of the machine peak efficiency and less than 12% overhead with respect to the fastest failure-free implementation. We predict (and have observed) that, as we increase the processor count, the overhead of the fault tolerance drops significantly

Havens: Explicit Reliable Memory Regions for HPC Applications

Supporting error resilience in future exascale-class supercomputing systems is a critical challenge. Due to transistor scaling trends and increasing memory density, scientific simulations are expected to experience more interruptions caused by transient errors in the system memory. Existing hardware-based detection and recovery techniques will be inadequate to manage the presence of high memory fault rates. In this paper we propose a partial memory protection scheme based on region-based memory management. We define the concept of regions called havens that provide fault protection for program objects. We provide reliability for the regions through a software-based parity protection mechanism. Our approach enables critical program objects to be placed in these havens. The fault coverage provided by our approach is application agnostic, unlike algorithm-based fault tolerance techniques.Comment: 2016 IEEE High Performance Extreme Computing Conference (HPEC '16), September 2016, Waltham, MA, US

Resilience in Numerical Methods: A Position on Fault Models and Methodologies

Future extreme-scale computer systems may expose silent data corruption (SDC) to applications, in order to save energy or increase performance. However, resilience research struggles to come up with useful abstract programming models for reasoning about SDC. Existing work randomly flips bits in running applications, but this only shows average-case behavior for a low-level, artificial hardware model. Algorithm developers need to understand worst-case behavior with the higher-level data types they actually use, in order to make their algorithms more resilient. Also, we know so little about how SDC may manifest in future hardware, that it seems premature to draw conclusions about the average case. We argue instead that numerical algorithms can benefit from a numerical unreliability fault model, where faults manifest as unbounded perturbations to floating-point data. Algorithms can use inexpensive "sanity" checks that bound or exclude error in the results of computations. Given a selective reliability programming model that requires reliability only when and where needed, such checks can make algorithms reliable despite unbounded faults. Sanity checks, and in general a healthy skepticism about the correctness of subroutines, are wise even if hardware is perfectly reliable.Comment: Position Pape

Correcting soft errors online in fast fourier transform

While many algorithm-based fault tolerance (ABFT) schemes have been proposed to detect soft errors offline in the fast Fourier transform (FFT) after computation finishes, none of the existing ABFT schemes detect soft errors online before the computation finishes. This paper presents an online ABFT scheme for FFT so that soft errors can be detected online and the corrupted computation can be terminated in a much more timely manner. We also extend our scheme to tolerate both arithmetic errors and memory errors, develop strategies to reduce its fault tolerance overhead and improve its numerical stability and fault coverage, and finally incorporate it into the widely used FFTW library - one of the today's fastest FFT software implementations. Experimental results demonstrate that: (1) the proposed online ABFT scheme introduces much lower overhead than the existing offline ABFT schemes; (2) it detects errors in a much more timely manner; and (3) it also has higher numerical stability and better fault coverage

Reliable Linear, Sesquilinear and Bijective Operations On Integer Data Streams Via Numerical Entanglement

A new technique is proposed for fault-tolerant linear, sesquilinear and bijective (LSB) operations on $M$ integer data streams ($M\geq3$), such as: scaling, additions/subtractions, inner or outer vector products, permutations and convolutions. In the proposed method, the $M$ input integer data streams are linearly superimposed to form $M$ numerically-entangled integer data streams that are stored in-place of the original inputs. A series of LSB operations can then be performed directly using these entangled data streams. The results are extracted from the $M$ entangled output streams by additions and arithmetic shifts. Any soft errors affecting any single disentangled output stream are guaranteed to be detectable via a specific post-computation reliability check. In addition, when utilizing a separate processor core for each of the $M$ streams, the proposed approach can recover all outputs after any single fail-stop failure. Importantly, unlike algorithm-based fault tolerance (ABFT) methods, the number of operations required for the entanglement, extraction and validation of the results is linearly related to the number of the inputs and does not depend on the complexity of the performed LSB operations. We have validated our proposal in an Intel processor (Haswell architecture with AVX2 support) via fast Fourier transforms, circular convolutions, and matrix multiplication operations. Our analysis and experiments reveal that the proposed approach incurs between $0.03\%$ to $7\%$ reduction in processing throughput for a wide variety of LSB operations. This overhead is 5 to 1000 times smaller than that of the equivalent ABFT method that uses a checksum stream. Thus, our proposal can be used in fault-generating processor hardware or safety-critical applications, where high reliability is required without the cost of ABFT or modular redundancy.Comment: to appear in IEEE Trans. on Signal Processing, 201

Failure Mitigation in Linear, Sesquilinear and Bijective Operations On Integer Data Streams Via Numerical Entanglement

A new roll-forward technique is proposed that recovers from any single fail-stop failure in $M$ integer data streams ($M\geq3$) when undergoing linear, sesquilinear or bijective (LSB) operations, such as: scaling, additions/subtractions, inner or outer vector products and permutations. In the proposed approach, the $M$ input integer data streams are linearly superimposed to form $M$ numerically entangled integer data streams that are stored in-place of the original inputs. A series of LSB operations can then be performed directly using these entangled data streams. The output results can be extracted from any $M-1$ entangled output streams by additions and arithmetic shifts, thereby guaranteeing robustness to a fail-stop failure in any single stream computation. Importantly, unlike other methods, the number of operations required for the entanglement, extraction and recovery of the results is linearly related to the number of the inputs and does not depend on the complexity of the performed LSB operations. We have validated our proposal in an Intel processor (Haswell architecture with AVX2 support) via convolution operations. Our analysis and experiments reveal that the proposed approach incurs only $1.8\%$ to $2.8\%$ reduction in processing throughput in comparison to the failure-intolerant approach. This overhead is 9 to 14 times smaller than that of the equivalent checksum-based method. Thus, our proposal can be used in distributed systems and unreliable processor hardware, or safety-critical applications, where robustness against fail-stop failures becomes a necessity.Comment: Proc. 21st IEEE International On-Line Testing Symposium (IOLTS 2015), July 2015, Halkidiki, Greec