2,559 research outputs found
Neuroimaging of structural pathology and connectomics in traumatic brain injury: Toward personalized outcome prediction.
Recent contributions to the body of knowledge on traumatic brain injury (TBI) favor the view that multimodal neuroimaging using structural and functional magnetic resonance imaging (MRI and fMRI, respectively) as well as diffusion tensor imaging (DTI) has excellent potential to identify novel biomarkers and predictors of TBI outcome. This is particularly the case when such methods are appropriately combined with volumetric/morphometric analysis of brain structures and with the exploration of TBI-related changes in brain network properties at the level of the connectome. In this context, our present review summarizes recent developments on the roles of these two techniques in the search for novel structural neuroimaging biomarkers that have TBI outcome prognostication value. The themes being explored cover notable trends in this area of research, including (1) the role of advanced MRI processing methods in the analysis of structural pathology, (2) the use of brain connectomics and network analysis to identify outcome biomarkers, and (3) the application of multivariate statistics to predict outcome using neuroimaging metrics. The goal of the review is to draw the community's attention to these recent advances on TBI outcome prediction methods and to encourage the development of new methodologies whereby structural neuroimaging can be used to identify biomarkers of TBI outcome
Tensor Analysis and Fusion of Multimodal Brain Images
Current high-throughput data acquisition technologies probe dynamical systems
with different imaging modalities, generating massive data sets at different
spatial and temporal resolutions posing challenging problems in multimodal data
fusion. A case in point is the attempt to parse out the brain structures and
networks that underpin human cognitive processes by analysis of different
neuroimaging modalities (functional MRI, EEG, NIRS etc.). We emphasize that the
multimodal, multi-scale nature of neuroimaging data is well reflected by a
multi-way (tensor) structure where the underlying processes can be summarized
by a relatively small number of components or "atoms". We introduce
Markov-Penrose diagrams - an integration of Bayesian DAG and tensor network
notation in order to analyze these models. These diagrams not only clarify
matrix and tensor EEG and fMRI time/frequency analysis and inverse problems,
but also help understand multimodal fusion via Multiway Partial Least Squares
and Coupled Matrix-Tensor Factorization. We show here, for the first time, that
Granger causal analysis of brain networks is a tensor regression problem, thus
allowing the atomic decomposition of brain networks. Analysis of EEG and fMRI
recordings shows the potential of the methods and suggests their use in other
scientific domains.Comment: 23 pages, 15 figures, submitted to Proceedings of the IEE
Evaluating the effects of high-throughput structural neuroimaging predictors on whole-brain functional connectome outcomes via network-based vector-on-matrix regression
The joint analysis of multimodal neuroimaging data is critical in the field
of brain research because it reveals complex interactive relationships between
neurobiological structures and functions. In this study, we focus on
investigating the effects of structural imaging (SI) features, including white
matter micro-structure integrity (WMMI) and cortical thickness, on the whole
brain functional connectome (FC) network. To achieve this goal, we propose a
network-based vector-on-matrix regression model to characterize the FC-SI
association patterns. We have developed a novel multi-level dense bipartite and
clique subgraph extraction method to identify which subsets of spatially
specific SI features intensively influence organized FC sub-networks. The
proposed method can simultaneously identify highly correlated
structural-connectomic association patterns and suppress false positive
findings while handling millions of potential interactions. We apply our method
to a multimodal neuroimaging dataset of 4,242 participants from the UK Biobank
to evaluate the effects of whole-brain WMMI and cortical thickness on the
resting-state FC. The results reveal that the WMMI on corticospinal tracts and
inferior cerebellar peduncle significantly affect functional connections of
sensorimotor, salience, and executive sub-networks with an average correlation
of 0.81 (p<0.001).Comment: 20 pages, 5 figures, 2 table
Fundamental activity constraints lead to specific interpretations of the connectome
The continuous integration of experimental data into coherent models of the
brain is an increasing challenge of modern neuroscience. Such models provide a
bridge between structure and activity, and identify the mechanisms giving rise
to experimental observations. Nevertheless, structurally realistic network
models of spiking neurons are necessarily underconstrained even if experimental
data on brain connectivity are incorporated to the best of our knowledge.
Guided by physiological observations, any model must therefore explore the
parameter ranges within the uncertainty of the data. Based on simulation
results alone, however, the mechanisms underlying stable and physiologically
realistic activity often remain obscure. We here employ a mean-field reduction
of the dynamics, which allows us to include activity constraints into the
process of model construction. We shape the phase space of a multi-scale
network model of the vision-related areas of macaque cortex by systematically
refining its connectivity. Fundamental constraints on the activity, i.e.,
prohibiting quiescence and requiring global stability, prove sufficient to
obtain realistic layer- and area-specific activity. Only small adaptations of
the structure are required, showing that the network operates close to an
instability. The procedure identifies components of the network critical to its
collective dynamics and creates hypotheses for structural data and future
experiments. The method can be applied to networks involving any neuron model
with a known gain function.Comment: J. Schuecker and M. Schmidt contributed equally to this wor
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