PACE Solver Description: Cluster Editing Kernelization Using CluES

This article briefly describes the most important algorithms and techniques used in the cluster editing kernelization solver called "CluES", submitted to the 6th Parameterized Algorithms and Computational Experiments Challenge (PACE 2021)

The PACE 2021 Parameterized Algorithms and Computational Experiments Challenge: Cluster Editing

The Parameterized Algorithms and Computational Experiments challenge (PACE) 2021 was devoted to engineer algorithms solving the NP-hard Cluster Editing problem, also known as Correlation Clustering: Given an undirected graph the task is to compute a minimum number of edges to insert or remove in a way that the resulting graph is a cluster graph, that is, a graph in which each connected component is a clique. Altogether 67 participants from 21 teams, 11 countries, and 3 continents submitted their implementations to the competition. In this report, we describe the setup of the challenge, the selection of benchmark instances, and the ranking of the participating teams. We also briefly discuss the approaches used in the submitted solvers

Tight bounds for parameterized complexity of Cluster Editing

In the Correlation Clustering problem, also known as Cluster Editing, we are given an undirected graph G and a positive integer k; the task is to decide whether G can be transformed into a cluster graph, i.e., a disjoint union of cliques, by changing at most k adjacencies, that is, by adding or deleting at most k edges. The motivation of the problem stems from various tasks in computational biology (Ben-Dor et al., Journal of Computational Biology 1999) and machine learning (Bansal et al., Machine Learning 2004). Although in general Correlation Clustering is APX-hard (Charikar et al., FOCS 2003), the version of the problem where the number of cliques may not exceed a prescribed constant p admits a PTAS (Giotis and Guruswami, SODA 2006). We study the parameterized complexity of Correlation Clustering with this restriction on the number of cliques to be created. We give an algorithm that - in time O(2^{O(sqrt{pk})} + n+m) decides whether a graph G on n vertices and m edges can be transformed into a cluster graph with exactly p cliques by changing at most k adjacencies. We complement these algorithmic findings by the following, surprisingly tight lower bound on the asymptotic behavior of our algorithm. We show that unless the Exponential Time Hypothesis (ETH) fails - for any constant 0 <= sigma <= 1, there is p = Theta(k^sigma) such that there is no algorithm deciding in time 2^{o(sqrt{pk})} n^{O(1)} whether an n-vertex graph G can be transformed into a cluster graph with at most p cliques by changing at most k adjacencies. Thus, our upper and lower bounds provide an asymptotically tight analysis of the multivariate parameterized complexity of the problem for the whole range of values of p from constant to a linear function of k.publishedVersio

PACE solver description: The KaPoCE exact cluster editing algorithm

The cluster editing problem is to transform an input graph into a cluster graph by performing a minimum number of edge editing operations. A cluster graph is a graph where each connected component is a clique. An edit operation can be either adding a new edge or removing an existing edge. In this write-up we outline the core techniques used in the exact cluster editing algorithm of the KaPoCE framework (contains also a heuristic solver), submitted to the exact track of the 2021 PACE challenge

PACE Solver Description: The KaPoCE Exact Cluster Editing Algorithm

The cluster editing problem is to transform an input graph into a cluster graph by performing a minimum number of edge editing operations. A cluster graph is a graph where each connected component is a clique. An edit operation can be either adding a new edge or removing an existing edge. In this write-up we outline the core techniques used in the exact cluster editing algorithm of the KaPoCE framework (contains also a heuristic solver), submitted to the exact track of the 2021 PACE challenge