A Relevance Feedback-Based System For Quickly Narrowing Biomedical Literature Search Result

The online literature is an important source that helps people find the information. The quick increase of online literature makes the manual search process for the most relevant information a very time-consuming task and leads to sifting through many results to find the relevant ones. The existing search engines and online databases return a list of results that satisfy the user\u27s search criteria. The list is often too long for the user to go through every hit if he/she does not exactly know what he/she wants or/and does not have time to review them one by one. My focus is on how to find biomedical literature in a fastest way. In this dissertation, I developed a biomedical literature search system that uses relevance feedback mechanism, fuzzy logic, text mining techniques and Unified Medical Language System. The system extracts and decodes information from the online biomedical documents and uses the extracted information to first filter unwanted documents and then ranks the related ones based on the user preferences. I used text mining techniques to extract PDF document features and used these features to filter unwanted documents with the help of fuzzy logic. The system extracts meaning and semantic relations between texts and calculates the similarity between documents using these relations. Moreover, I developed a fuzzy literature ranking method that uses fuzzy logic, text mining techniques and Unified Medical Language System. The ranking process is utilized based on fuzzy logic and Unified Medical Language System knowledge resources. The fuzzy ranking method uses semantic type and meaning concepts to map the relations between texts in documents. The relevance feedback-based biomedical literature search system is evaluated using a real biomedical data that created using dobutamine (drug name). The data set contains 1,099 original documents. To obtain coherent and reliable evaluation results, two physicians are involved in the system evaluation. Using (30-day mortality) as specific query, the retrieved result precision improves by 87.7% in three rounds, which shows the effectiveness of using relevance feedback, fuzzy logic and UMLS in the search process. Moreover, the fuzzy-based ranking method is evaluated in term of ranking the biomedical search result. Experiments show that the fuzzy-based ranking method improves the average ranking order accuracy by 3.35% and 29.55% as compared with UMLS meaning and semantic type methods respectively

Facilitating Design-by-Analogy: Development of a Complete Functional Vocabulary and Functional Vector Approach to Analogical Search

Design-by-analogy is an effective approach to innovative concept generation, but can be elusive at times due to the fact that few methods and tools exist to assist designers in systematically seeking and identifying analogies from general data sources, databases, or repositories, such as patent databases. A new method for extracting analogies from data sources has been developed to provide this capability. Building on past research, we utilize a functional vector space model to quantify analogous similarity between a design problem and the data source of potential analogies. We quantitatively evaluate the functional similarity between represented design problems and, in this case, patent descriptions of products. We develop a complete functional vocabulary to map the patent database to applicable functionally critical terms, using document parsing algorithms to reduce text descriptions of the data sources down to the key functions, and applying Zipf’s law on word count order reduction to reduce the words within the documents. The reduction of a document (in this case a patent) into functional analogous words enables the matching to novel ideas that are functionally similar, which can be customized in various ways. This approach thereby provides relevant sources of design-by-analogy inspiration. Although our implementation of the technique focuses on functional descriptions of patents and the mapping of these functions to those of the design problem, resulting in a set of analogies, we believe that this technique is applicable to other analogy data sources as well. As a verification of the approach, an original design problem for an automated window washer illustrates the distance range of analogical solutions that can be extracted, extending from very near-field, literal solutions to far-field cross-domain analogies. Finally, a comparison with a current patent search tool is performed to draw a contrast to the status quo and evaluate the effectiveness of this work.National Science Foundation (U.S.) (grant number CMMI-0855510)National Science Foundation (U.S.) (grant number CMMI-0855326)National Science Foundation (U.S.) (grant number CMMI-0855293)SUTD-MIT International Design Centre (IDC

Function Based Design-by-Analogy: A Functional Vector Approach to Analogical Search

Design-by-analogy is a powerful approach to augment traditional concept generation methods by expanding the set of generated ideas using similarity relationships from solutions to analogous problems. While the concept of design-by-analogy has been known for some time, few actual methods and tools exist to assist designers in systematically seeking and identifying analogies from general data sources, databases, or repositories, such as patent databases. A new method for extracting functional analogies from data sources has been developed to provide this capability, here based on a functional basis rather than form or conflict descriptions. Building on past research, we utilize a functional vector space model (VSM) to quantify analogous similarity of an idea's functionality. We quantitatively evaluate the functional similarity between represented design problems and, in this case, patent descriptions of products. We also develop document parsing algorithms to reduce text descriptions of the data sources down to the key functions, for use in the functional similarity analysis and functional vector space modeling. To do this, we apply Zipf's law on word count order reduction to reduce the words within the documents down to the applicable functionally critical terms, thus providing a mapping process for function based search. The reduction of a document into functional analogous words enables the matching to novel ideas that are functionally similar, which can be customized various ways. This approach thereby provides relevant sources of design-by-analogy inspiration. As a verification of the approach, two original design problem case studies illustrate the distance range of analogical solutions that can be extracted. This range extends from very near-field, literal solutions to far-field cross-domain analogies.National Science Foundation (U.S.) (Grant CMMI-0855326)National Science Foundation (U.S.) (Grant CMMI-0855510)National Science Foundation (U.S.) (Grant CMMI-0855293)SUTD-MIT International Design Centre (IDC

Biologically Inspired Design Concept Generation Using Generative Pre-Trained Transformers

Biological systems in nature have evolved for millions of years to adapt and survive the environment. Many features they developed can be inspirational and beneficial for solving technical problems in modern industries. This leads to a specific form of design-by-analogy called bio-inspired design (BID). Although BID as a design method has been proven beneficial, the gap between biology and engineering continuously hinders designers from effectively applying the method. Therefore, we explore the recent advance of artificial intelligence (AI) for a data-driven approach to bridge the gap. This paper proposes a generative design approach based on the generative pre-trained language model (PLM) to automatically retrieve and map biological analogy and generate BID in the form of natural language. The latest generative pre-trained transformer, namely GPT-3, is used as the base PLM. Three types of design concept generators are identified and fine-tuned from the PLM according to the looseness of the problem space representation. Machine evaluators are also fine-tuned to assess the mapping relevancy between the domains within the generated BID concepts. The approach is evaluated and then employed in a real-world project of designing light-weighted flying cars during its conceptual design phase The results show our approach can generate BID concepts with good performance.Comment: Accepted by J. Mech. Des. arXiv admin note: substantial text overlap with arXiv:2204.0971

Automatic abstracting: a review and an empirical evaluation

The abstract is a fundamental tool in information retrieval. As condensed representations, they facilitate conservation of the increasingly precious search time and space of scholars, allowing them to manage more effectively an ever-growing deluge of documentation. Traditionally the product of human intellectual effort, attempts to automate the abstracting process began in 1958. Two identifiable automatic abstracting techniques emerged which reflect differing levels of ambition regarding simulation of the human abstracting process, namely sentence extraction and text summarisation. This research paradigm has recently diversified further, with a cross-fertilisation of methods. Commercial systems are beginning to appear, but automatic abstracting is still mainly confined to an experimental arena. The purpose of this study is firstly to chart the historical development and current state of both manual and automatic abstracting; and secondly, to devise and implement an empirical user-based evaluation to assess the adequacy of automatic abstracts derived from sentence extraction techniques according to a set of utility criteria. [Continues.