The state of MIIND

MIIND (Multiple Interacting Instantiations of Neural Dynamics) is a highly modular multi-level C++ framework, that aims to shorten the development time for models in Cognitive Neuroscience (CNS). It offers reusable code modules (libraries of classes and functions) aimed at solving problems that occur repeatedly in modelling, but tries not to impose a specific modelling philosophy or methodology. At the lowest level, it offers support for the implementation of sparse networks. For example, the library SparseImplementationLib supports sparse random networks and the library LayerMappingLib can be used for sparse regular networks of filter-like operators. The library DynamicLib, which builds on top of the library SparseImplementationLib, offers a generic framework for simulating network processes. Presently, several specific network process implementations are provided in MIIND: the Wilson–Cowan and Ornstein–Uhlenbeck type, and population density techniques for leaky-integrate-and-fire neurons driven by Poisson input. A design principle of MIIND is to support detailing: the refinement of an originally simple model into a form where more biological detail is included. Another design principle is extensibility: the reuse of an existing model in a larger, more extended one. One of the main uses of MIIND so far has been the instantiation of neural models of visual attention. Recently, we have added a library for implementing biologically-inspired models of artificial vision, such as HMAX and recent successors. In the long run we hope to be able to apply suitably adapted neuronal mechanisms of attention to these artificial models

Performance Analysis for Mesh and Mesh-Spectral Archetype Applications

This document outlines a simple method for benchmarking a parallel communication library and for using the results to model the performance of applications developed with that communication library. We use compositional performance analysis - decomposing a parallel program into its modular parts and analyzing their respective performances - to gain perspective on the performance of the whole program. This model is useful for predicting parallel program execution times for different types of program archetypes, (e.g., mesh and mesh-spectral) using communication libraries built with different message-passing schemes (e.g., Fortran M and Fortran with MPI) running on different architectures (e.g., IBM SP2 and a network of Pentium personal computers)

Continuous-variable quantum neural networks

We introduce a general method for building neural networks on quantum computers. The quantum neural network is a variational quantum circuit built in the continuous-variable (CV) architecture, which encodes quantum information in continuous degrees of freedom such as the amplitudes of the electromagnetic field. This circuit contains a layered structure of continuously parameterized gates which is universal for CV quantum computation. Affine transformations and nonlinear activation functions, two key elements in neural networks, are enacted in the quantum network using Gaussian and non-Gaussian gates, respectively. The non-Gaussian gates provide both the nonlinearity and the universality of the model. Due to the structure of the CV model, the CV quantum neural network can encode highly nonlinear transformations while remaining completely unitary. We show how a classical network can be embedded into the quantum formalism and propose quantum versions of various specialized model such as convolutional, recurrent, and residual networks. Finally, we present numerous modeling experiments built with the Strawberry Fields software library. These experiments, including a classifier for fraud detection, a network which generates Tetris images, and a hybrid classical-quantum autoencoder, demonstrate the capability and adaptability of CV quantum neural networks

Using RDF to Model the Structure and Process of Systems

Many systems can be described in terms of networks of discrete elements and their various relationships to one another. A semantic network, or multi-relational network, is a directed labeled graph consisting of a heterogeneous set of entities connected by a heterogeneous set of relationships. Semantic networks serve as a promising general-purpose modeling substrate for complex systems. Various standardized formats and tools are now available to support practical, large-scale semantic network models. First, the Resource Description Framework (RDF) offers a standardized semantic network data model that can be further formalized by ontology modeling languages such as RDF Schema (RDFS) and the Web Ontology Language (OWL). Second, the recent introduction of highly performant triple-stores (i.e. semantic network databases) allows semantic network models on the order of $10^9$ edges to be efficiently stored and manipulated. RDF and its related technologies are currently used extensively in the domains of computer science, digital library science, and the biological sciences. This article will provide an introduction to RDF/RDFS/OWL and an examination of its suitability to model discrete element complex systems.Comment: International Conference on Complex Systems, Boston MA, October 200