6,522 research outputs found
Steric engineering of metal-halide perovskites with tunable optical band gaps
Owing to their high energy-conversion efficiency and inexpensive fabrication
routes, solar cells based on metal-organic halide perovskites have rapidly
gained prominence as a disruptive technology. An attractive feature of
perovskite absorbers is the possibility of tailoring their properties by
changing the elemental composition through the chemical precursors. In this
context, rational in silico design represents a powerful tool for mapping the
vast materials landscape and accelerating discovery. Here we show that the
optical band gap of metal-halide perovskites, a key design parameter for solar
cells, strongly correlates with a simple structural feature, the largest
metal-halide-metal bond angle. Using this descriptor we suggest continuous
tunability of the optical gap from the mid-infrared to the visible. Precise
band gap engineering is achieved by controlling the bond angles through the
steric size of the molecular cation. Based on these design principles we
predict novel low-gap perovskites for optimum photovoltaic efficiency, and we
demonstrate the concept of band gap modulation by synthesising and
characterising novel mixed-cation perovskites.Comment: This manuscript was submitted for publication on March 6th, 2014.
Many of the results presented in this manuscript were presented at the
International Conference on Solution processed Semiconductor Solar Cells,
held in Oxford, UK, on 10-12 September 2014. The manuscript is 37 pages long
and contains 8 figure
Complexity of increasing the secure connectivity in wireless ad hoc networks
We consider the problem of maximizing the secure connectivity in wireless ad hoc networks, and analyze complexity of the post-deployment key establishment process constrained by physical layer properties such as connectivity, energy consumption and interference. Two approaches, based on graph augmentation problems with nonlinear edge costs, are formulated. The first one is based on establishing a secret key using only the links that are already secured by shared keys. This problem is in NP-hard and does not accept polynomial time approximation scheme PTAS since minimum cutsets to be augmented do not admit constant costs. The second one extends the first problem by increasing the power level between a pair of nodes that has a secret key to enable them physically connect. This problem can be formulated as the optimal key establishment problem with interference constraints with bi-objectives: (i) maximizing the concurrent key establishment flow, (ii) minimizing the cost. We prove that both problems are NP-hard and MAX-SNP with a reduction to MAX3SAT problem
Structural Prediction of ProteinâProtein Interactions by Docking: Application to Biomedical Problems
A huge amount of genetic information is available thanks to the recent advances in sequencing technologies and the larger computational capabilities, but the interpretation of such genetic data at phenotypic level remains elusive. One of the reasons is that proteins are not acting alone, but are specifically interacting with other proteins and biomolecules, forming intricate interaction networks that are essential for the majority of cell processes and pathological conditions. Thus, characterizing such interaction networks is an important step in understanding how information flows from gene to phenotype. Indeed, structural characterization of proteinâprotein interactions at atomic resolution has many applications in biomedicine, from diagnosis and vaccine design, to drug discovery. However, despite the advances of experimental structural determination, the number of interactions for which there is available structural data is still very small. In this context, a complementary approach is computational modeling of protein interactions by docking, which is usually composed of two major phases: (i) sampling of the possible binding modes between the interacting molecules and (ii) scoring for the identification of the correct orientations. In addition, prediction of interface and hot-spot residues is very useful in order to guide and interpret mutagenesis experiments, as well as to understand functional and mechanistic aspects of the interaction. Computational docking is already being applied to specific biomedical problems within the context of personalized medicine, for instance, helping to interpret pathological mutations involved in proteinâprotein interactions, or providing modeled structural data for drug discovery targeting proteinâprotein interactions.Spanish Ministry of Economy grant number BIO2016-79960-R; D.B.B. is supported by a
predoctoral fellowship from CONACyT; M.R. is supported by an FPI fellowship from the
Severo Ochoa program. We are grateful to the Joint BSC-CRG-IRB Programme in
Computational Biology.Peer ReviewedPostprint (author's final draft
Structure-based drug discovery with deep learning
Artificial intelligence (AI) in the form of deep learning bears promise for
drug discovery and chemical biology, , to predict protein
structure and molecular bioactivity, plan organic synthesis, and design
molecules . While most of the deep learning efforts in drug
discovery have focused on ligand-based approaches, structure-based drug
discovery has the potential to tackle unsolved challenges, such as affinity
prediction for unexplored protein targets, binding-mechanism elucidation, and
the rationalization of related chemical kinetic properties. Advances in deep
learning methodologies and the availability of accurate predictions for protein
tertiary structure advocate for a in structure-based
approaches for drug discovery guided by AI. This review summarizes the most
prominent algorithmic concepts in structure-based deep learning for drug
discovery, and forecasts opportunities, applications, and challenges ahead
Hierarchical Annotated Skeleton-Guided Tree-based Motion Planning
We present a hierarchical tree-based motion planning strategy, HAS-RRT,
guided by the workspace skeleton to solve motion planning problems in robotics
and computational biology. Relying on the information about the connectivity of
the workspace and the ranking of available paths in the workspace, the strategy
prioritizes paths indicated by the workspace guidance to find a valid motion
plan for the moving object efficiently. In instances of suboptimal guidance,
the strategy adapts its reliance on the guidance by hierarchically reverting to
local exploration of the planning space. We offer an extensive comparative
analysis against other tree-based planning strategies and demonstrate that
HAS-RRT reliably and efficiently finds low-cost paths. In contrast to methods
prone to inconsistent performance across different environments or reliance on
specific parameters, HAS-RRT is robust to workspace variability
The Surface Laplacian Technique in EEG: Theory and Methods
This paper reviews the method of surface Laplacian differentiation to study
EEG. We focus on topics that are helpful for a clear understanding of the
underlying concepts and its efficient implementation, which is especially
important for EEG researchers unfamiliar with the technique. The popular
methods of finite difference and splines are reviewed in detail. The former has
the advantage of simplicity and low computational cost, but its estimates are
prone to a variety of errors due to discretization. The latter eliminates all
issues related to discretization and incorporates a regularization mechanism to
reduce spatial noise, but at the cost of increasing mathematical and
computational complexity. These and several others issues deserving further
development are highlighted, some of which we address to the extent possible.
Here we develop a set of discrete approximations for Laplacian estimates at
peripheral electrodes and a possible solution to the problem of multiple-frame
regularization. We also provide the mathematical details of finite difference
approximations that are missing in the literature, and discuss the problem of
computational performance, which is particularly important in the context of
EEG splines where data sets can be very large. Along this line, the matrix
representation of the surface Laplacian operator is carefully discussed and
some figures are given illustrating the advantages of this approach. In the
final remarks, we briefly sketch a possible way to incorporate finite-size
electrodes into Laplacian estimates that could guide further developments.Comment: 43 pages, 8 figure
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