1,017 research outputs found
A generative spike train model with time-structured higher order correlations
Emerging technologies are revealing the spiking activity in ever larger
neural ensembles. Frequently, this spiking is far from independent, with
correlations in the spike times of different cells. Understanding how such
correlations impact the dynamics and function of neural ensembles remains an
important open problem. Here we describe a new, generative model for correlated
spike trains that can exhibit many of the features observed in data. Extending
prior work in mathematical finance, this generalized thinning and shift (GTaS)
model creates marginally Poisson spike trains with diverse temporal correlation
structures. We give several examples which highlight the model's flexibility
and utility. For instance, we use it to examine how a neural network responds
to highly structured patterns of inputs. We then show that the GTaS model is
analytically tractable, and derive cumulant densities of all orders in terms of
model parameters. The GTaS framework can therefore be an important tool in the
experimental and theoretical exploration of neural dynamics
Deep representation learning for human motion prediction and classification
Generative models of 3D human motion are often restricted to a small number
of activities and can therefore not generalize well to novel movements or
applications. In this work we propose a deep learning framework for human
motion capture data that learns a generic representation from a large corpus of
motion capture data and generalizes well to new, unseen, motions. Using an
encoding-decoding network that learns to predict future 3D poses from the most
recent past, we extract a feature representation of human motion. Most work on
deep learning for sequence prediction focuses on video and speech. Since
skeletal data has a different structure, we present and evaluate different
network architectures that make different assumptions about time dependencies
and limb correlations. To quantify the learned features, we use the output of
different layers for action classification and visualize the receptive fields
of the network units. Our method outperforms the recent state of the art in
skeletal motion prediction even though these use action specific training data.
Our results show that deep feedforward networks, trained from a generic mocap
database, can successfully be used for feature extraction from human motion
data and that this representation can be used as a foundation for
classification and prediction.Comment: This paper is published at the IEEE Conference on Computer Vision and
Pattern Recognition (CVPR), 201
Event-Driven Contrastive Divergence for Spiking Neuromorphic Systems
Restricted Boltzmann Machines (RBMs) and Deep Belief Networks have been
demonstrated to perform efficiently in a variety of applications, such as
dimensionality reduction, feature learning, and classification. Their
implementation on neuromorphic hardware platforms emulating large-scale
networks of spiking neurons can have significant advantages from the
perspectives of scalability, power dissipation and real-time interfacing with
the environment. However the traditional RBM architecture and the commonly used
training algorithm known as Contrastive Divergence (CD) are based on discrete
updates and exact arithmetics which do not directly map onto a dynamical neural
substrate. Here, we present an event-driven variation of CD to train a RBM
constructed with Integrate & Fire (I&F) neurons, that is constrained by the
limitations of existing and near future neuromorphic hardware platforms. Our
strategy is based on neural sampling, which allows us to synthesize a spiking
neural network that samples from a target Boltzmann distribution. The recurrent
activity of the network replaces the discrete steps of the CD algorithm, while
Spike Time Dependent Plasticity (STDP) carries out the weight updates in an
online, asynchronous fashion. We demonstrate our approach by training an RBM
composed of leaky I&F neurons with STDP synapses to learn a generative model of
the MNIST hand-written digit dataset, and by testing it in recognition,
generation and cue integration tasks. Our results contribute to a machine
learning-driven approach for synthesizing networks of spiking neurons capable
of carrying out practical, high-level functionality.Comment: (Under review
The equivalence of information-theoretic and likelihood-based methods for neural dimensionality reduction
Stimulus dimensionality-reduction methods in neuroscience seek to identify a
low-dimensional space of stimulus features that affect a neuron's probability
of spiking. One popular method, known as maximally informative dimensions
(MID), uses an information-theoretic quantity known as "single-spike
information" to identify this space. Here we examine MID from a model-based
perspective. We show that MID is a maximum-likelihood estimator for the
parameters of a linear-nonlinear-Poisson (LNP) model, and that the empirical
single-spike information corresponds to the normalized log-likelihood under a
Poisson model. This equivalence implies that MID does not necessarily find
maximally informative stimulus dimensions when spiking is not well described as
Poisson. We provide several examples to illustrate this shortcoming, and derive
a lower bound on the information lost when spiking is Bernoulli in discrete
time bins. To overcome this limitation, we introduce model-based dimensionality
reduction methods for neurons with non-Poisson firing statistics, and show that
they can be framed equivalently in likelihood-based or information-theoretic
terms. Finally, we show how to overcome practical limitations on the number of
stimulus dimensions that MID can estimate by constraining the form of the
non-parametric nonlinearity in an LNP model. We illustrate these methods with
simulations and data from primate visual cortex
Statistical Machine Learning Methods for High-dimensional Neural Population Data Analysis
Advances in techniques have been producing increasingly complex neural recordings, posing significant challenges for data analysis. This thesis discusses novel statistical methods for analyzing high-dimensional neural data. Part one discusses two extensions of state space models tailored to neural data analysis. First, we propose using a flexible count data distribution family in the observation model to faithfully capture over-dispersion and under-dispersion of the neural observations. Second, we incorporate nonlinear observation models into state space models to improve the flexibility of the model and get a more concise representation of the data. For both extensions, novel variational inference techniques are developed for model fitting, and simulated and real experiments show the advantages of our extensions. Part two discusses a fast region of interest (ROI) detection method for large-scale calcium imaging data based on structured matrix factorization. Part three discusses a method for sampling from a maximum entropy distribution with complicated constraints, which is useful for hypothesis testing for neural data analysis and many other applications related to maximum entropy formulation. We conclude the thesis with discussions and future works
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