Simplified Energy Landscape for Modularity Using Total Variation

Networks capture pairwise interactions between entities and are frequently used in applications such as social networks, food networks, and protein interaction networks, to name a few. Communities, cohesive groups of nodes, often form in these applications, and identifying them gives insight into the overall organization of the network. One common quality function used to identify community structure is modularity. In Hu et al. [SIAM J. App. Math., 73(6), 2013], it was shown that modularity optimization is equivalent to minimizing a particular nonconvex total variation (TV) based functional over a discrete domain. They solve this problem, assuming the number of communities is known, using a Merriman, Bence, Osher (MBO) scheme. We show that modularity optimization is equivalent to minimizing a convex TV-based functional over a discrete domain, again, assuming the number of communities is known. Furthermore, we show that modularity has no convex relaxation satisfying certain natural conditions. We therefore, find a manageable non-convex approximation using a Ginzburg Landau functional, which provably converges to the correct energy in the limit of a certain parameter. We then derive an MBO algorithm with fewer hand-tuned parameters than in Hu et al. and which is 7 times faster at solving the associated diffusion equation due to the fact that the underlying discretization is unconditionally stable. Our numerical tests include a hyperspectral video whose associated graph has 2.9x10^7 edges, which is roughly 37 times larger than was handled in the paper of Hu et al.Comment: 25 pages, 3 figures, 3 tables, submitted to SIAM J. App. Mat

An efficient threshold dynamics method for topology optimization for fluids

We propose an efficient threshold dynamics method for topology optimization for fluids modeled with the Stokes equation. The proposed algorithm is based on minimization of an objective energy function that consists of the dissipation power in the fluid and the perimeter approximated by nonlocal energy, subject to a fluid volume constraint and the incompressibility condition. We show that the minimization problem can be solved with an iterative scheme in which the Stokes equation is approximated by a Brinkman equation. The indicator functions of the fluid-solid regions are then updated according to simple convolutions followed by a thresholding step. We demonstrate mathematically that the iterative algorithm has the total energy decaying property. The proposed algorithm is simple and easy to implement. A simple adaptive time strategy is also used to accelerate the convergence of the iteration. Extensive numerical experiments in both two and three dimensions show that the proposed iteration algorithm converges in much fewer iterations and is more efficient than many existing methods. In addition, the numerical results show that the algorithm is very robust and insensitive to the initial guess and the parameters in the model.Comment: 23 pages, 24 figure

Dynamics and stationary configurations of heterogeneous foams

We consider the variational foam model, where the goal is to minimize the total surface area of a collection of bubbles subject to the constraint that the volume of each bubble is prescribed. We apply sharp interface methods to develop an efficient computational method for this problem. In addition to simulating time dynamics, we also report on stationary states of this flow for <22 bubbles in two dimensions and <18 bubbles in three dimensions. For small numbers of bubbles, we recover known analytical results, which we briefly discuss. In two dimensions, we also recover the previous numerical results of Cox et. al. (2003), computed using other methods. Particular attention is given to locally optimal foam configurations and heterogeneous foams, where the volumes of the bubbles are not equal. Configurational transitions are reported for the quasi-stationary flow where the volume of one of the bubbles is varied and, for each volume, the stationary state is computed. The results from these numerical experiments are described and accompanied by many figures and videos.Comment: 19 pages, 11 figure