941 research outputs found

    Quantitative image analysis in cardiac CT angiography

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    Quantitative image analysis in cardiac CT angiography

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    Coronary Artery Centerline Extraction in Cardiac CT Angiography Using a CNN-Based Orientation Classifier

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    Coronary artery centerline extraction in cardiac CT angiography (CCTA) images is a prerequisite for evaluation of stenoses and atherosclerotic plaque. We propose an algorithm that extracts coronary artery centerlines in CCTA using a convolutional neural network (CNN). A 3D dilated CNN is trained to predict the most likely direction and radius of an artery at any given point in a CCTA image based on a local image patch. Starting from a single seed point placed manually or automatically anywhere in a coronary artery, a tracker follows the vessel centerline in two directions using the predictions of the CNN. Tracking is terminated when no direction can be identified with high certainty. The CNN was trained using 32 manually annotated centerlines in a training set consisting of 8 CCTA images provided in the MICCAI 2008 Coronary Artery Tracking Challenge (CAT08). Evaluation using 24 test images of the CAT08 challenge showed that extracted centerlines had an average overlap of 93.7% with 96 manually annotated reference centerlines. Extracted centerline points were highly accurate, with an average distance of 0.21 mm to reference centerline points. In a second test set consisting of 50 CCTA scans, 5,448 markers in the coronary arteries were used as seed points to extract single centerlines. This showed strong correspondence between extracted centerlines and manually placed markers. In a third test set containing 36 CCTA scans, fully automatic seeding and centerline extraction led to extraction of on average 92% of clinically relevant coronary artery segments. The proposed method is able to accurately and efficiently determine the direction and radius of coronary arteries. The method can be trained with limited training data, and once trained allows fast automatic or interactive extraction of coronary artery trees from CCTA images.Comment: Accepted in Medical Image Analysi

    Coronary Artery Segmentation and Motion Modelling

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    Conventional coronary artery bypass surgery requires invasive sternotomy and the use of a cardiopulmonary bypass, which leads to long recovery period and has high infectious potential. Totally endoscopic coronary artery bypass (TECAB) surgery based on image guided robotic surgical approaches have been developed to allow the clinicians to conduct the bypass surgery off-pump with only three pin holes incisions in the chest cavity, through which two robotic arms and one stereo endoscopic camera are inserted. However, the restricted field of view of the stereo endoscopic images leads to possible vessel misidentification and coronary artery mis-localization. This results in 20-30% conversion rates from TECAB surgery to the conventional approach. We have constructed patient-specific 3D + time coronary artery and left ventricle motion models from preoperative 4D Computed Tomography Angiography (CTA) scans. Through temporally and spatially aligning this model with the intraoperative endoscopic views of the patient's beating heart, this work assists the surgeon to identify and locate the correct coronaries during the TECAB precedures. Thus this work has the prospect of reducing the conversion rate from TECAB to conventional coronary bypass procedures. This thesis mainly focus on designing segmentation and motion tracking methods of the coronary arteries in order to build pre-operative patient-specific motion models. Various vessel centreline extraction and lumen segmentation algorithms are presented, including intensity based approaches, geometric model matching method and morphology-based method. A probabilistic atlas of the coronary arteries is formed from a group of subjects to facilitate the vascular segmentation and registration procedures. Non-rigid registration framework based on a free-form deformation model and multi-level multi-channel large deformation diffeomorphic metric mapping are proposed to track the coronary motion. The methods are applied to 4D CTA images acquired from various groups of patients and quantitatively evaluated

    In Vivo MRI-Based Three-Dimensional Fluid-Structure Interaction Models and Mechanical Image Analysis for Human Carotid Atherosclerotic Plaques

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    Introduction. Atherosclerotic plaque rupture may occur without warning leading to severe clinical events such as heart attack and stroke. The mechanisms causing plaque rupture are not well understood. It is hypothesized that mechanical forces may play an important role in the plaque rupture process and that image-based computational mechanical analysis may provide useful information for more accurate plaque vulnerability assessment. The objectives of this dissertation are: a) develop in vivo magnetic resonance imaging (MRI)-based 3D computational models with fluid-structure Interactions (FSI) for human atherosclerotic carotid plaques; b) perform mechanical analysis using 3D FSI models to identify critical stress/strain conditions which may be used for possible plaque rupture predictions. Data, Model, and Methods. Histological, ex vivo/ in vivo MRI data of human carotid plaques were provided by the University of Washington Medical School and Washington University Medical School. Blood flow was assumed to be laminar, Newtonian, viscous and incompressible. The Navier-Stokes equations with arbitrary Lagrangian-Eulerian (ALE) formulation were used as the governing equations for the flow model. The vessel and plaque components were assumed to be hyperelastic, isotropic, nearly-incompressible and homogeneous. The nonlinear Mooney-Rivlin model was used to describe the nonlinear properties of the materials with parameter values chosen to match available experimental data. The fully-coupled FSI models were solved by a commercial finite element software ADINA to obtain full 3D flow and stress/strain distributions for analysis. Validation of the computational models and Adina software were provided by comparing computational solutions with analytic solutions and experimental data. Several novel methods were introduced to address some fundamental issues for construction of in vivo MRI-based 3D FSI models: a) an automated MRI segmentation technique using a Bayes theorem with normal probability distribution was implemented to obtain plaque geometry with enclosed components; b) a pre-shrink process was introduced to shrink the in vivo MRI geometry to obtain the no-load shape of the plaque; c) a Volume Component-Fitting Method was introduced to generate a 3D computational mesh for the plaque model with deformable complex geometry, FSI and inclusions; d) a method using MRI data obtained under in vitro pressurized conditions was introduced to determine vessel material properties. Results. The effects of material properties on flow and wall stress/strain behaviors were evaluated. The results indicate that a 100% stiffness increase may decrease maximal values of maximum principal stress (Stress-P1) and maximum principal strain (Strain-P1) by about 20% and 40%, respectively; flow Maximum-Shear-Stress (FMSS) and flow velocity did not show noticeable changes. By comparing ex vivo and in vivo data of 10 plaque samples, the average axial (25%) and inner circumferential (7.9%) shrinkages of the plaques between loaded and unloaded state were obtained. Effects of the shrink-stretch process on plaque stress/strain distributions were demonstrated based on six adjusted 3D FSI models with different shrinkages. Stress-P1 and Strain-P1 increased 349.8% and 249% respectively with 33% axial stretch. The effects of a lipid-rich necrotic core and fibrous cap thickness on structure/flow behaviors were investigated. The mean values of wall Stress-P1 and Strain-P1 from lipid nodes from a ruptured plaque were significantly higher than those from a non-ruptured plaque (112.3 kPa, 0.235 & 80.1 kPa, 0.185), which was 40.2% and 26.8% higher, respectively (p\u3c0.001). High stress/strain concentrations were found at the thin fibrous cap regions. These results indicate that high stress concentrations and thin fibrous cap thickness might be critical indicators for plaque vulnerability. Conclusion. In vivo image-based 3D FSI models and mechanical image analysis may have the potential to provide quantitative risk indicators for plaque vulnerability assessment

    Deep Learning in Cardiology

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    The medical field is creating large amount of data that physicians are unable to decipher and use efficiently. Moreover, rule-based expert systems are inefficient in solving complicated medical tasks or for creating insights using big data. Deep learning has emerged as a more accurate and effective technology in a wide range of medical problems such as diagnosis, prediction and intervention. Deep learning is a representation learning method that consists of layers that transform the data non-linearly, thus, revealing hierarchical relationships and structures. In this review we survey deep learning application papers that use structured data, signal and imaging modalities from cardiology. We discuss the advantages and limitations of applying deep learning in cardiology that also apply in medicine in general, while proposing certain directions as the most viable for clinical use.Comment: 27 pages, 2 figures, 10 table
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