A Decision Support System to design modified atmosphere packaging for fresh produce based on a bipolar flexible querying approach

UMR IATE Axe 3 : Transferts de matière et réactions dans les systèmes aliment/emballage UMR IATE Axe 5 : Application intégrée de la connaissance, de l’information et des technologies permettant d’accroître la qualité et la sécurité des alimentsInternational audienceTo design new packaging for fresh food, stakeholders of the food chain express their needs and requirements, according to some goals and objectives. These requirements can be gathered into two groups: (i) fresh food related characteristics and (ii) packaging intrinsic characteristics. Modified Atmosphere Packaging (MAP) is an efficient way to delay senescence and spoilage and thus to extend the very short shelf life of respiring products such as fresh fruits and vegetables. Consequently, packaging O2/CO2 permeabilities must fit the requirements of fresh fruits and vegetable as predicted by virtual MAP simulating tools. Beyond gas permeabilities, the choice of a packaging material for fresh produce includes numerous other factors such as the cost, availability, potential contaminants of raw materials, process ability, waste management constraints, etc. For instance, the user may have the following multi-criteria query for his/her product asking for a packaging with optimal gas permeabilities that guarantee product quality and optionally a transparent packaging material made from renewable resources with a cost for raw material less than 3 e/ kg. To help stakeholders taking a rational decision based on the expressed needs, a new multi-criteria Decision Support System (DSS) for designing biodegradable packaging for fresh produce has been built. In this paper we present the functional specification, the software architecture and the implementation of the developed tool. This tool includes (i) a MAP simulation module combining mass transfer models and respiration of the food, (ii) a multi-criteria flexible querying module which handles imprecise, uncertain and missing data stored in the database. We detail its operational functioning through a real life case study to determine the most satisfactory materials for apricots packaging

A Decision Support System to design modified atmosphere packaging for fresh produce based on a bipolar flexible querying approach

UMR IATE Axe 3 : Transferts de matière et réactions dans les systèmes aliment/emballage UMR IATE Axe 5 : Application intégrée de la connaissance, de l’information et des technologies permettant d’accroître la qualité et la sécurité des alimentsInternational audienceTo design new packaging for fresh food, stakeholders of the food chain express their needs and requirements, according to some goals and objectives. These requirements can be gathered into two groups: (i) fresh food related characteristics and (ii) packaging intrinsic characteristics. Modified Atmosphere Packaging (MAP) is an efficient way to delay senescence and spoilage and thus to extend the very short shelf life of respiring products such as fresh fruits and vegetables. Consequently, packaging O2/CO2 permeabilities must fit the requirements of fresh fruits and vegetable as predicted by virtual MAP simulating tools. Beyond gas permeabilities, the choice of a packaging material for fresh produce includes numerous other factors such as the cost, availability, potential contaminants of raw materials, process ability, waste management constraints, etc. For instance, the user may have the following multi-criteria query for his/her product asking for a packaging with optimal gas permeabilities that guarantee product quality and optionally a transparent packaging material made from renewable resources with a cost for raw material less than 3 e/ kg. To help stakeholders taking a rational decision based on the expressed needs, a new multi-criteria Decision Support System (DSS) for designing biodegradable packaging for fresh produce has been built. In this paper we present the functional specification, the software architecture and the implementation of the developed tool. This tool includes (i) a MAP simulation module combining mass transfer models and respiration of the food, (ii) a multi-criteria flexible querying module which handles imprecise, uncertain and missing data stored in the database. We detail its operational functioning through a real life case study to determine the most satisfactory materials for apricots packaging

A decision support system for eco-efficient biorefinery process comparison using a semantic approach

Enzymatic hydrolysis of the main components of lignocellulosic biomass is one of the promising methods to further upgrading it into biofuels. Biomass pre-treatment is an essential step in order to reduce cellulose crystallinity, increase surface and porosity and separate the major constituents of biomass. Scientific literature in this domain is increasing fast and could be a valuable source of data. As these abundant scientific data are mostly in textual format and heterogeneously structured, using them to compute biomass pre-treatment efficiency is not straightforward. This paper presents the implementation of a Decision Support System (DSS) based on an original pipeline coupling knowledge engineering (KE) based on semantic web technologies, soft computing techniques and environmental factor computation. The DSS allows using data found in the literature to assess environmental sustainability of biorefinery systems. The pipeline permits to: (1) structure and integrate relevant experimental data, (2) assess data source reliability, (3) compute and visualize green indicators taking into account data imprecision and source reliability. This pipeline has been made possible thanks to innovative researches in the coupling of ontologies, uncertainty management and propagation. In this first version, data acquisition is done by experts and facilitated by a termino-ontological resource. Data source reliability assessment is based on domain knowledge and done by experts. The operational prototype has been used by field experts on a realistic use case (rice straw). The obtained results have validated the usefulness of the system. Further work will address the question of a higher automation level for data acquisition and data source reliability assessment

Interval analysis on non-linear monotonic systems as an efficient tool to optimise fresh food packaging

IATE Axe 5 : Application intégrée de la connaissance, de l’information et des technologies permettant d’accroître la qualité et la sécurité des alimentsInternational audienceWhen few data or information are available, the validity of studies performing uncertainty analysis or robust design optimisation (i.e., parameter optimisation under uncertainty) with a probabilistic approach is questionable. This is particularly true in some agronomical fields, where parameter and variable uncertainties are often quantified by a handful of measurements or by expert opinions. In this paper, we propose a simple alternative approach based on interval analysis, which avoids the pitfalls of a classical probabilistic approach. We propose simple methods to achieve uncertainty propagation, parameter optimisation and sensitivity analysis in cases where the model satisfies some monotonic properties. As a real-world case study, we interest ourselves to the application developed in our laboratory that has motivated the present work, that is the design of sustainable food packaging preserving fresh fruits and vegetables as long as possible

Parameters uncertainties and error propagation in modified atmosphere packaging modelling

IATE Axe 5 : Application intégrée de la connaissance, de l’information et des technologies permettant d’accroître la qualité et la sécurité des aliments Publication Inra prise en compte dans l'analyse bibliométrique des publications scientifiques mondiales sur les Fruits, les Légumes et la Pomme de terre. Période 2000-2012. http://prodinra.inra.fr/record/256699International audienceMathematical models are instrumental tools to predict gas (O2 and CO2) evolution in headspaces of Modified Atmosphere Packaging (MAP). Such models simplify the package design steps as they allow engineers to estimate the optimal values of packaging permeability for maintaining the quality and safety of the packed food. However, these models typically require specifying several input parameter values (such as maximal respiration rates) that are obtained from experimental data and are characterized by high uncertainties due to biological variation. Although treating and modelling this uncertainty is essential to ensure the robustness of designed MAPs, this subject has seldom been considered in the literature. In this work, we describe an optimisation system based on a MAP mathematical model that determines optimal permeabilities of packaging, given certain food parameters. To integrate uncertainties in the model while keeping the optimisation computational burden relatively low, we propose to use an approach based on interval analysis rather than the more classical probabilistic approach. The approach has two advantages: it makes a minimal amount of unverified assumption concerning uncertainties, and it requires only a few evaluations of the model. The results of these uncertainty studies are optimal values of permeabilities described by fuzzy sets. This approach was conducted on three case studies: chicory, mushrooms and blueberry. Sensitivity analysis on input parameters in the model MAP was also performed in order to point out that parameter influences are dependent on the considered fruit or vegetable. A comparison of the interval analysis methodology with the probabilistic one (known as Monte Carlo) was then performed and discussed

Acesso remoto dinâmico e seguro a bases de dados com integração de políticas de acesso suave

The amount of data being created and shared has grown greatly in recent years, thanks in part to social media and the growth of smart devices. Managing the storage and processing of this data can give a competitive edge when used to create new services, to enhance targeted advertising, etc. To achieve this, the data must be accessed and processed. When applications that access this data are developed, tools such as Java Database Connectivity, ADO.NET and Hibernate are typically used. However, while these tools aim to bridge the gap between databases and the object-oriented programming paradigm, they focus only on the connectivity issue. This leads to increased development time as developers need to master the access policies to write correct queries. Moreover, when used in database applications within noncontrolled environments, other issues emerge such as database credentials theft; application authentication; authorization and auditing of large groups of new users seeking access to data, potentially with vague requirements; network eavesdropping for data and credential disclosure; impersonating database servers for data modification; application tampering for unrestricted database access and data disclosure; etc. Therefore, an architecture capable of addressing these issues is necessary to build a reliable set of access control solutions to expand and simplify the application scenarios of access control systems. The objective, then, is to secure the remote access to databases, since database applications may be used in hard-to-control environments and physical access to the host machines/network may not be always protected. Furthermore, the authorization process should dynamically grant the appropriate permissions to users that have not been explicitly authorized to handle large groups seeking access to data. This includes scenarios where the definition of the access requirements is difficult due to their vagueness, usually requiring a security expert to authorize each user individually. This is achieved by integrating and auditing soft access policies based on fuzzy set theory in the access control decision-making process. A proof-of-concept of this architecture is provided alongside a functional and performance assessment.A quantidade de dados criados e partilhados tem crescido nos últimos anos, em parte graças às redes sociais e à proliferação dos dispositivos inteligentes. A gestão do armazenamento e processamento destes dados pode fornecer uma vantagem competitiva quando usados para criar novos serviços, para melhorar a publicidade direcionada, etc. Para atingir este objetivo, os dados devem ser acedidos e processados. Quando as aplicações que acedem a estes dados são desenvolvidos, ferramentas como Java Database Connectivity, ADO.NET e Hibernate são normalmente utilizados. No entanto, embora estas ferramentas tenham como objetivo preencher a lacuna entre as bases de dados e o paradigma da programação orientada por objetos, elas concentram-se apenas na questão da conectividade. Isto aumenta o tempo de desenvolvimento, pois os programadores precisam dominar as políticas de acesso para escrever consultas corretas. Além disso, quando usado em aplicações de bases de dados em ambientes não controlados, surgem outros problemas, como roubo de credenciais da base de dados; autenticação de aplicações; autorização e auditoria de grandes grupos de novos utilizadores que procuram acesso aos dados, potencialmente com requisitos vagos; escuta da rede para obtenção de dados e credenciais; personificação de servidores de bases de dados para modificação de dados; manipulação de aplicações para acesso ilimitado à base de dados e divulgação de dados; etc. Uma arquitetura capaz de resolver esses problemas é necessária para construir um conjunto confiável de soluções de controlo de acesso, para expandir e simplificar os cenários de aplicação destes sistemas. O objetivo, então, é proteger o acesso remoto a bases de dados, uma vez que as aplicações de bases de dados podem ser usados em ambientes de difícil controlo e o acesso físico às máquinas/rede nem sempre está protegido. Adicionalmente, o processo de autorização deve conceder dinamicamente as permissões adequadas aos utilizadores que não foram explicitamente autorizados para suportar grupos grandes de utilizadores que procuram aceder aos dados. Isto inclui cenários em que a definição dos requisitos de acesso é difícil devido à sua imprecisão, geralmente exigindo um especialista em segurança para autorizar cada utilizador individualmente. Este objetivo é atingido no processo de decisão de controlo de acesso com a integração e auditaria das políticas de acesso suaves baseadas na teoria de conjuntos difusos. Uma prova de conceito desta arquitetura é fornecida em conjunto com uma avaliação funcional e de desempenho.Programa Doutoral em Informátic

Causal inference for heritable phenotypic risk factors using heterogeneous genetic instruments.

Over a decade of genome-wide association studies (GWAS) have led to the finding of extreme polygenicity of complex traits. The phenomenon that "all genes affect every complex trait" complicates Mendelian Randomization (MR) studies, where natural genetic variations are used as instruments to infer the causal effect of heritable risk factors. We reexamine the assumptions of existing MR methods and show how they need to be clarified to allow for pervasive horizontal pleiotropy and heterogeneous effect sizes. We propose a comprehensive framework GRAPPLE to analyze the causal effect of target risk factors with heterogeneous genetic instruments and identify possible pleiotropic patterns from data. By using GWAS summary statistics, GRAPPLE can efficiently use both strong and weak genetic instruments, detect the existence of multiple pleiotropic pathways, determine the causal direction and perform multivariable MR to adjust for confounding risk factors. With GRAPPLE, we analyze the effect of blood lipids, body mass index, and systolic blood pressure on 25 disease outcomes, gaining new information on their causal relationships and potential pleiotropic pathways involved

Formal concept matching and reinforcement learning in adaptive information retrieval

The superiority of the human brain in information retrieval (IR) tasks seems to come firstly from its ability to read and understand the concepts, ideas or meanings central to documents, in order to reason out the usefulness of documents to information needs, and secondly from its ability to learn from experience and be adaptive to the environment. In this work we attempt to incorporate these properties into the development of an IR model to improve document retrieval. We investigate the applicability of concept lattices, which are based on the theory of Formal Concept Analysis (FCA), to the representation of documents. This allows the use of more elegant representation units, as opposed to keywords, in order to better capture concepts/ideas expressed in natural language text. We also investigate the use of a reinforcement leaming strategy to learn and improve document representations, based on the information present in query statements and user relevance feedback. Features or concepts of each document/query, formulated using FCA, are weighted separately with respect to the documents they are in, and organised into separate concept lattices according to a subsumption relation. Furthen-nore, each concept lattice is encoded in a two-layer neural network structure known as a Bidirectional Associative Memory (BAM), for efficient manipulation of the concepts in the lattice representation. This avoids implementation drawbacks faced by other FCA-based approaches. Retrieval of a document for an information need is based on concept matching between concept lattice representations of a document and a query. The learning strategy works by making the similarity of relevant documents stronger and non-relevant documents weaker for each query, depending on the relevance judgements of the users on retrieved documents. Our approach is radically different to existing FCA-based approaches in the following respects: concept formulation; weight assignment to object-attribute pairs; the representation of each document in a separate concept lattice; and encoding concept lattices in BAM structures. Furthermore, in contrast to the traditional relevance feedback mechanism, our learning strategy makes use of relevance feedback information to enhance document representations, thus making the document representations dynamic and adaptive to the user interactions. The results obtained on the CISI, CACM and ASLIB Cranfield collections are presented and compared with published results. In particular, the performance of the system is shown to improve significantly as the system learns from experience.The School of Computing, University of Plymouth, UK