Genetic programming assisted stochastic optimization strategies for optimization of glucose to gluconic acid fermentation

This article presents two hybrid strategies for the modeling and optimization of the glucose to gluconic acid batch bioprocess. In the hybrid approaches, first a novel artificial intelligence formalism, namely, genetic programming (GP), is used to develop a process model solely from the historic process input-output data. In the next step, the input space of the GP-based model, representing process operating conditions, is optimized using two stochastic optimization (SO) formalisms, viz., genetic algorithms (GAs) and simultaneous perturbation stochastic approximation (SPSA). These SO formalisms possess certain unique advantages over the commonly used gradient-based optimization techniques. The principal advantage of the GP-GA and GP-SPSA hybrid techniques is that process modeling and optimization can be performed exclusively from the process input-output data without invoking the detailed knowledge of the process phenomenology. The GP-GA and GP-SPSA techniques have been employed for modeling and optimization of the glucose to gluconic acid bioprocess, and the optimized process operating conditions obtained thereby have been compared with those obtained using two other hybrid modeling-optimization paradigms integrating artificial neural networks (ANNs) and GA/SPSA formalisms. Finally, the overall optimized operating conditions given by the GP-GA method, when verified experimentally resulted in a significant improvement in the gluconic acid yield. The hybrid strategies presented here are generic in nature and can be employed for modeling and optimization of a wide variety of batch and continuous bioprocesses

ESTIMATION OF GREENHOUSE GAS AND ODOUR EMISSIONS FROM COLD REGION MUNICIPAL BIOLOGICAL NUTRIENT REMOVAL WASTEWATER TREATMENT PROCESSES

Rising human populations and ever-increasing demand for potable water result in increased municipal wastewater production. The collection, treatment, and management of municipal wastewaters include energy-intensive processes leading to the generation and emission of greenhouse, potentially toxic, and odorous gases. The main goal of this thesis was to advance knowledge of greenhouse gas (including carbon dioxide, CO2; methane, CH4; and nitrous oxide, N2O) and smelly compound (including ammonia, NH3; and hydrogen sulphide, H2S) emissions from typical municipal wastewater treatment plants (MWTPs) to accurately describe their emission rate estimates (EREs) using operating parameters. This research included laboratory and field assessments of greenhouse gas (GHG) and odour emissions in conjunction with monitored operating parameters. Laboratory-scale reactors simulating open-to-air treatment processes including primary and secondary clarifiers and anaerobic, anoxic, and aerobic reactors, were used to monitor gas EREs using wastewater samples taken from the analogous MWTP processes in winter and summer seasons. The Saskatoon Wastewater Treatment plan (SWTP) is a state-of-the-art biological nutrient removal (BNR) type MWTP and a Class IV treatment facility in Canada which was selected as a case study given its highly variable seasonal temperatures from −40 °C to 30 °C and its geographic location near the University of Saskatchewan. The experimental results were then used to develop a variety of novel machine learning models describing gas EREs with further optimization of operating parameters using genetic algorithm (GA). Studied machine learning models were artificial data generation algorithms (including generative adversarial network, GAN) and data-driven models (including artificial neural network, ANN; adaptive network-based fuzzy inference systems, ANFIS; and linear/non-linear regression models). To my knowledge, this is the first application of GAN used for MWTP modelling purposes. Results indicated that anaerobic digestion EREs averagely reached 4,443 kg CH4/d, 9,145 kg CO2/d, and 59.7 kg H2S/d. In contrast, GHG and odour ERE variabilities given ambient temperature changes were more noticeable for open-to-air treatment processes such that the winter EREs were 45,129 kg CO2/d, 21.9 kg CH4/d, 3.20 kg N2O/d, and insignificant for H2S and NH3. The higher temperature for the summer samples resulted in increased EREs for CH4, N2O, and H2S EREs of 33.0 kg CH4/d, 3.87 kg N2O/d, and 2.29 kg H2S/d, respectively, and still insignificant NH3 emissions. However, the CO2 EREs were reduced to 37,794 kg CO2/d, and interestingly, NH3 emissions were still negligible. Overall, the aerobic reactor was the dominant source of GHG emissions for both seasons, and changes in the aerobic reactor aeration rates (in reactor) and BNR treatment configurations (from site) further impacted the EREs. The integration of field monitoring data with data-driven models showed that the ANN, ANFIS, and regression models provided reasonable EREs using: (1) volatile fatty acids, total/fixed/volatile solids, pH, and inflow rate for anaerobic digestion biogas generations; and (2) hydraulic retention time, temperature, total organic carbon, dissolved oxygen, phosphate, and nitrogen concentrations for aerobic GHG emissions. However, when both model accuracy and uncertainty were considered there appears to be a compromise between these parameters with no model having simultaneously both high accuracy and low uncertainty. Additionally, and interestingly, virtual data augmentation using GAN was found to be a valuable resource in supplementation of limited data for improved modelling outcomes. GA was also coupled with the data-driven models to determine optimal operating parameters resulting in either GHG emission maximization given biogas could be beneficial for energy generation or GHG emission minimization given the aerobic reactor is an open-to-air process that can impact nearby residential neighbourhood air quality. The current study provides a hybrid methodology of mathematical modelling and experiments that can be used to accurately estimate and optimize the GHG and odour EREs from other MWTPs in Canada and worldwide

A Comparison Between Different Modeling Techniques for the Production of Bio-ethanol from Dairy Industry Wastes

In the present work, the fermentation process aimed at obtaining bio-ethanol starting from ricotta cheese whey (RCW), a waste biomass rich in lactose, was simulated by both a pure neural network model (NM) and a multiple hybrid neural model (HNM). The simulation results showed that the developed HNM was capable of providing an accurate representation of the actual time evolution of lactose, ethanol and biomass concentrations even in conditions never exploited during model development. HNM predictions indeed exhibited an average percentage error lower than 10 %, as compared to the experimental data collected during RCW fermentation runs. The proposed methodology, leading to the formulation of a hybrid paradigm, may allow overcoming some of the inherent difficulties accompanying the development of reliable models that are called to describe the true behavior of biotechnological processes

Machine learning in bioprocess development: From promise to practice

Fostered by novel analytical techniques, digitalization and automation, modern bioprocess development provides high amounts of heterogeneous experimental data, containing valuable process information. In this context, data-driven methods like machine learning (ML) approaches have a high potential to rationally explore large design spaces while exploiting experimental facilities most efficiently. The aim of this review is to demonstrate how ML methods have been applied so far in bioprocess development, especially in strain engineering and selection, bioprocess optimization, scale-up, monitoring and control of bioprocesses. For each topic, we will highlight successful application cases, current challenges and point out domains that can potentially benefit from technology transfer and further progress in the field of ML