Beeping a Maximal Independent Set

We consider the problem of computing a maximal independent set (MIS) in an extremely harsh broadcast model that relies only on carrier sensing. The model consists of an anonymous broadcast network in which nodes have no knowledge about the topology of the network or even an upper bound on its size. Furthermore, it is assumed that an adversary chooses at which time slot each node wakes up. At each time slot a node can either beep, that is, emit a signal, or be silent. At a particular time slot, beeping nodes receive no feedback, while silent nodes can only differentiate between none of its neighbors beeping, or at least one of its neighbors beeping. We start by proving a lower bound that shows that in this model, it is not possible to locally converge to an MIS in sub-polynomial time. We then study four different relaxations of the model which allow us to circumvent the lower bound and find an MIS in polylogarithmic time. First, we show that if a polynomial upper bound on the network size is known, it is possible to find an MIS in O(log^3 n) time. Second, if we assume sleeping nodes are awoken by neighboring beeps, then we can also find an MIS in O(log^3 n) time. Third, if in addition to this wakeup assumption we allow sender-side collision detection, that is, beeping nodes can distinguish whether at least one neighboring node is beeping concurrently or not, we can find an MIS in O(log^2 n) time. Finally, if instead we endow nodes with synchronous clocks, it is also possible to find an MIS in O(log^2 n) time.Comment: arXiv admin note: substantial text overlap with arXiv:1108.192

Unifying Sparsest Cut, Cluster Deletion, and Modularity Clustering Objectives with Correlation Clustering

Graph clustering, or community detection, is the task of identifying groups of closely related objects in a large network. In this paper we introduce a new community-detection framework called LambdaCC that is based on a specially weighted version of correlation clustering. A key component in our methodology is a clustering resolution parameter, $\lambda$, which implicitly controls the size and structure of clusters formed by our framework. We show that, by increasing this parameter, our objective effectively interpolates between two different strategies in graph clustering: finding a sparse cut and forming dense subgraphs. Our methodology unifies and generalizes a number of other important clustering quality functions including modularity, sparsest cut, and cluster deletion, and places them all within the context of an optimization problem that has been well studied from the perspective of approximation algorithms. Our approach is particularly relevant in the regime of finding dense clusters, as it leads to a 2-approximation for the cluster deletion problem. We use our approach to cluster several graphs, including large collaboration networks and social networks

Beyond Distributed Subgraph Detection: Induced Subgraphs, Multicolored Problems and Graph Parameters

Subgraph detection has recently been one of the most studied problems in the CONGEST model of distributed computing. In this work, we study the distributed complexity of problems closely related to subgraph detection, mainly focusing on induced subgraph detection. The main line of this work presents lower bounds and parameterized algorithms w.r.t structural parameters of the input graph: - On general graphs, we give unconditional lower bounds for induced detection of cycles and patterns of treewidth 2 in CONGEST. Moreover, by adapting reductions from centralized parameterized complexity, we prove lower bounds in CONGEST for detecting patterns with a 4-clique, and for induced path detection conditional on the hardness of triangle detection in the congested clique. - On graphs of bounded degeneracy, we show that induced paths can be detected fast in CONGEST using techniques from parameterized algorithms, while detecting cycles and patterns of treewidth 2 is hard. - On graphs of bounded vertex cover number, we show that induced subgraph detection is easy in CONGEST for any pattern graph. More specifically, we adapt a centralized parameterized algorithm for a more general maximum common induced subgraph detection problem to the distributed setting. In addition to these induced subgraph detection results, we study various related problems in the CONGEST and congested clique models, including for multicolored versions of subgraph-detection-like problems

Next Generation Cluster Editing

This work aims at improving the quality of structural variant prediction from the mapped reads of a sequenced genome. We suggest a new model based on cluster editing in weighted graphs and introduce a new heuristic algorithm that allows to solve this problem quickly and with a good approximation on the huge graphs that arise from biological datasets

Maximum Common Subgraph Isomorphism Algorithms

Maximum common subgraph (MCS) isomorphism algorithms play an important role in chemoinformatics by providing an effective mechanism for the alignment of pairs of chemical structures. This article discusses the various types of MCS that can be identified when two graphs are compared and reviews some of the algorithms that are available for this purpose, focusing on those that are, or may be, applicable to the matching of chemical graphs

Deterministic Subgraph Detection in Broadcast CONGEST

We present simple deterministic algorithms for subgraph finding and enumeration in the broadcast CONGEST model of distributed computation: - For any constant k, detecting k-paths and trees on k nodes can be done in O(1) rounds. - For any constant k, detecting k-cycles and pseudotrees on k nodes can be done in O(n) rounds. - On d-degenerate graphs, cliques and 4-cycles can be enumerated in O(d + log n) rounds, and 5-cycles in O(d2 + log n) rounds. In many cases, these bounds are tight up to logarithmic factors. Moreover, we show that the algorithms for d-degenerate graphs can be improved to O(d/logn) and O(d2/logn), respect- ively, in the supported CONGEST model, which can be seen as an intermediate model between CONGEST and the congested clique

Deterministic subgraph detection in broadcast CONGEST

We present simple deterministic algorithms for subgraph finding and enumeration in the broadcast CONGEST model of distributed computation: For any constant k, detecting k-paths and trees on k nodes can be done in O(1) rounds. For any constant k, detecting k-cycles and pseudotrees on k nodes can be done in O(n) rounds. On d-degenerate graphs, cliques and 4-cycles can be enumerated in O(d+log n) rounds, and 5-cycles in O(d2 + log n) rounds. In many cases, these bounds are tight up to logarithmic factors. Moreover, we show that the algorithms for d-degenerate graphs can be improved to O(d/ log n) and O(d2/log n), respectively, in the supported CONGEST model, which can be seen as an intermediate model between CONGEST and the congested clique. © 2017 Janne H. Korhonen and Joel Rybicki.Peer reviewe