Characterization of complex networks: A survey of measurements

Each complex network (or class of networks) presents specific topological features which characterize its connectivity and highly influence the dynamics of processes executed on the network. The analysis, discrimination, and synthesis of complex networks therefore rely on the use of measurements capable of expressing the most relevant topological features. This article presents a survey of such measurements. It includes general considerations about complex network characterization, a brief review of the principal models, and the presentation of the main existing measurements. Important related issues covered in this work comprise the representation of the evolution of complex networks in terms of trajectories in several measurement spaces, the analysis of the correlations between some of the most traditional measurements, perturbation analysis, as well as the use of multivariate statistics for feature selection and network classification. Depending on the network and the analysis task one has in mind, a specific set of features may be chosen. It is hoped that the present survey will help the proper application and interpretation of measurements.Comment: A working manuscript with 78 pages, 32 figures. Suggestions of measurements for inclusion are welcomed by the author

Toric algebra of hypergraphs

The edges of any hypergraph parametrize a monomial algebra called the edge subring of the hypergraph. We study presentation ideals of these edge subrings, and describe their generators in terms of balanced walks on hypergraphs. Our results generalize those for the defining ideals of edge subrings of graphs, which are well-known in the commutative algebra community, and popular in the algebraic statistics community. One of the motivations for studying toric ideals of hypergraphs comes from algebraic statistics, where generators of the toric ideal give a basis for random walks on fibers of the statistical model specified by the hypergraph. Further, understanding the structure of the generators gives insight into the model geometry.Comment: Section 3 is new: it explains connections to log-linear models in algebraic statistics and to combinatorial discrepancy. Section 6 (open problems) has been moderately revise

On some intriguing problems in Hamiltonian graph theory -- A survey

We survey results and open problems in Hamiltonian graph theory centred around three themes: regular graphs, $t$-tough graphs, and claw-free graphs

Controlling edge dynamics in complex networks

The interaction of distinct units in physical, social, biological and technological systems naturally gives rise to complex network structures. Networks have constantly been in the focus of research for the last decade, with considerable advances in the description of their structural and dynamical properties. However, much less effort has been devoted to studying the controllability of the dynamics taking place on them. Here we introduce and evaluate a dynamical process defined on the edges of a network, and demonstrate that the controllability properties of this process significantly differ from simple nodal dynamics. Evaluation of real-world networks indicates that most of them are more controllable than their randomized counterparts. We also find that transcriptional regulatory networks are particularly easy to control. Analytic calculations show that networks with scale-free degree distributions have better controllability properties than uncorrelated networks, and positively correlated in- and out-degrees enhance the controllability of the proposed dynamics.Comment: Preprint. 24 pages, 4 figures, 2 tables. Source code available at http://github.com/ntamas/netctr

Steinitz Theorems for Orthogonal Polyhedra

We define a simple orthogonal polyhedron to be a three-dimensional polyhedron with the topology of a sphere in which three mutually-perpendicular edges meet at each vertex. By analogy to Steinitz's theorem characterizing the graphs of convex polyhedra, we find graph-theoretic characterizations of three classes of simple orthogonal polyhedra: corner polyhedra, which can be drawn by isometric projection in the plane with only one hidden vertex, xyz polyhedra, in which each axis-parallel line through a vertex contains exactly one other vertex, and arbitrary simple orthogonal polyhedra. In particular, the graphs of xyz polyhedra are exactly the bipartite cubic polyhedral graphs, and every bipartite cubic polyhedral graph with a 4-connected dual graph is the graph of a corner polyhedron. Based on our characterizations we find efficient algorithms for constructing orthogonal polyhedra from their graphs.Comment: 48 pages, 31 figure