Automating the Surveillance of Mosquito Vectors from Trapped Specimens Using Computer Vision Techniques

Among all animals, mosquitoes are responsible for the most deaths worldwide. Interestingly, not all types of mosquitoes spread diseases, but rather, a select few alone are competent enough to do so. In the case of any disease outbreak, an important first step is surveillance of vectors (i.e., those mosquitoes capable of spreading diseases). To do this today, public health workers lay several mosquito traps in the area of interest. Hundreds of mosquitoes will get trapped. Naturally, among these hundreds, taxonomists have to identify only the vectors to gauge their density. This process today is manual, requires complex expertise/ training, and is based on visual inspection of each trapped specimen under a microscope. It is long, stressful and self-limiting. This paper presents an innovative solution to this problem. Our technique assumes the presence of an embedded camera (similar to those in smart-phones) that can take pictures of trapped mosquitoes. Our techniques proposed here will then process these images to automatically classify the genus and species type. Our CNN model based on Inception-ResNet V2 and Transfer Learning yielded an overall accuracy of 80% in classifying mosquitoes when trained on 25,867 images of 250 trapped mosquito vector specimens captured via many smart-phone cameras. In particular, the accuracy of our model in classifying Aedes aegypti and Anopheles stephensi mosquitoes (both of which are deadly vectors) is amongst the highest. We present important lessons learned and practical impact of our techniques towards the end of the paper

A genetic algorithm approach for predicting ribonucleic acid sequencing data classification using KNN and decision tree

Malaria larvae accept explosive variable lifecycle as they spread across numerous mosquito vector stratosphere. Transcriptomes arise in thousands of diverse parasites. Ribonucleic acid sequencing (RNA-seq) is a prevalent gene expression that has led to enhanced understanding of genetic queries. RNA-seq tests transcript of gene expression, and provides methodological enhancements to machine learning procedures. Researchers have proposed several methods in evaluating and learning biological data. Genetic algorithm (GA) as a feature selection process is used in this study to fetch relevant information from the RNA-Seq Mosquito Anopheles gambiae malaria vector dataset, and evaluates the results using kth nearest neighbor (KNN) and decision tree classification algorithms. The experimental results obtained a classification accuracy of 88.3 and 98.3 percents respectively

Malarial Diagnosis with Deep Learning and Image Processing Approaches

Malaria is a mosquito-borne disease that has killed an estimated a half-a-million people worldwide since 2000. It may be time consuming and costly to conduct thorough laboratory testing for malaria, and it also requires the skills of trained laboratory personnel. Additionally, human analysis might make mistakes. Integrating denoising and image segmentation techniques with Generative Adversarial Network (GAN) as a data augmentation technique can enhance the performance of diagnosis. Various deep learning models, such as CNN, ResNet50, and VGG19, for recognising the Plasmodium parasite in thick blood smear images have been used. The experimental results indicate that the VGG19 model performed best by achieving 98.46% compared to other approaches. This study demonstrates the potential of artificial intelligence to improve the speed and precision of pathogen detection which is more effective than manual analysis

Classification of Microscopic Malaria Parasitized Images Using Deep Learning Feature Fusion

An infectious disease that causes a chronic and potentially life-threatening infection caused by microorganisms of the Plasmodium class, is malaria, or malarial disease. It is critical to detect the presence of Malaria parasites as early as possible to ensure that antimalarial treatment is adequate to cure the particular type of Plasmodium. This is to reduce death rates and to focus on various infections in the event of an adverse outcome. The purpose of this study was to develop an artificial intelligence approach capable of separating parasitized erythrocytes from normal basophilic erythrocytes as well as platelets overlying the red blood cells to overcome the high cost of Ma-laria diagnostic equipment. The tone and texture characteristics of erythrocyte images were extracted using histo-gram thresholds and watershed methods, and then fused with Squeeze Net and ShuffleNet algorithms. The measures included planning, preparing, approving, and testing Deep Convolution Neural Network Segmentation without preparation using a graphic processor unit. A total of 96 percent accuracy and specificity was obtained for the position of malaria in red blood cells based on the results of all of the tests. It has been demonstrated that deep learning can be effective in the field of clinical pathology. This provides new directions for development as well as increasing awareness of researchers in this field

PEA265: Perceptual Assessment of Video Compression Artifacts

The most widely used video encoders share a common hybrid coding framework that includes block-based motion estimation/compensation and block-based transform coding. Despite their high coding efficiency, the encoded videos often exhibit visually annoying artifacts, denoted as Perceivable Encoding Artifacts (PEAs), which significantly degrade the visual Qualityof- Experience (QoE) of end users. To monitor and improve visual QoE, it is crucial to develop subjective and objective measures that can identify and quantify various types of PEAs. In this work, we make the first attempt to build a large-scale subjectlabelled database composed of H.265/HEVC compressed videos containing various PEAs. The database, namely the PEA265 database, includes 4 types of spatial PEAs (i.e. blurring, blocking, ringing and color bleeding) and 2 types of temporal PEAs (i.e. flickering and floating). Each containing at least 60,000 image or video patches with positive and negative labels. To objectively identify these PEAs, we train Convolutional Neural Networks (CNNs) using the PEA265 database. It appears that state-of-theart ResNeXt is capable of identifying each type of PEAs with high accuracy. Furthermore, we define PEA pattern and PEA intensity measures to quantify PEA levels of compressed video sequence. We believe that the PEA265 database and our findings will benefit the future development of video quality assessment methods and perceptually motivated video encoders.Comment: 10 pages,15 figures,4 table

Spotting Insects from Satellites: Modeling the Presence of Culicoides Imicola Through Deep CNNs

Nowadays, Vector-Borne Diseases (VBDs) raise a severe threat for public health, accounting for a considerable amount of human illnesses. Recently, several surveillance plans have been put in place for limiting the spread of such diseases, typically involving on-field measurements. Such a systematic and effective plan still misses, due to the high costs and efforts required for implementing it. Ideally, any attempt in this field should consider the triangle vectors-host-pathogen, which is strictly linked to the environmental and climatic conditions. In this paper, we exploit satellite imagery from Sentinel-2 mission, as we believe they encode the environmental factors responsible for the vector's spread. Our analysis - conducted in a data-driver fashion - couples spectral images with ground-truth information on the abundance of Culicoides imicola. In this respect, we frame our task as a binary classification problem, underpinning Convolutional Neural Networks (CNNs) as being able to learn useful representation from multi-band images. Additionally, we provide a multi-instance variant, aimed at extracting temporal patterns from a short sequence of spectral images. Experiments show promising results, providing the foundations for novel supportive tools, which could depict where surveillance and prevention measures could be prioritized

Deep Learning Algorithms Improve Automated Identification of Chagas Disease Vectors

This is a pre-copyedited, author-produced version of an article accepted for publication in Journal of Medical Entomology following peer review. The version of record is available online at: https;//doi.org/https://doi.org/10.1093/jme/tjz065Vector-borne Chagas disease is endemic to the Americas and imposes significant economic and social burdens on public health. In a previous contribution, we presented an automated identification system that was able to discriminate among 12 Mexican and 39 Brazilian triatomine (Hemiptera: Reduviidae) species from digital images. To explore the same data more deeply using machine-learning approaches, hoping for improvements in classification, we employed TensorFlow, an open-source software platform for a deep learning algorithm. We trained the algorithm based on 405 images for Mexican triatomine species and 1,584 images for Brazilian triatomine species. Our system achieved 83.0 and 86.7% correct identification rates across all Mexican and Brazilian species, respectively, an improvement over comparable rates from statistical classifiers (80.3 and 83.9%, respectively). Incorporating distributional information to reduce numbers of species in analyses improved identification rates to 95.8% for Mexican species and 98.9% for Brazilian species. Given the ‘taxonomic impediment’ and difficulties in providing entomological expertise necessary to control such diseases, automating the identification process offers a potential partial solution to crucial challenges

Data mining as a tool for environmental scientists

Over recent years a huge library of data mining algorithms has been developed to tackle a variety of problems in fields such as medical imaging and network traffic analysis. Many of these techniques are far more flexible than more classical modelling approaches and could be usefully applied to data-rich environmental problems. Certain techniques such as Artificial Neural Networks, Clustering, Case-Based Reasoning and more recently Bayesian Decision Networks have found application in environmental modelling while other methods, for example classification and association rule extraction, have not yet been taken up on any wide scale. We propose that these and other data mining techniques could be usefully applied to difficult problems in the field. This paper introduces several data mining concepts and briefly discusses their application to environmental modelling, where data may be sparse, incomplete, or heterogenous