Forward and Backward Bisimulations for Chemical Reaction Networks

We present two quantitative behavioral equivalences over species of a chemical reaction network (CRN) with semantics based on ordinary differential equations. Forward CRN bisimulation identifies a partition where each equivalence class represents the exact sum of the concentrations of the species belonging to that class. Backward CRN bisimulation relates species that have the identical solutions at all time points when starting from the same initial conditions. Both notions can be checked using only CRN syntactical information, i.e., by inspection of the set of reactions. We provide a unified algorithm that computes the coarsest refinement up to our bisimulations in polynomial time. Further, we give algorithms to compute quotient CRNs induced by a bisimulation. As an application, we find significant reductions in a number of models of biological processes from the literature. In two cases we allow the analysis of benchmark models which would be otherwise intractable due to their memory requirements.Comment: Extended version of the CONCUR 2015 pape

Equivalence-Checking on Infinite-State Systems: Techniques and Results

The paper presents a selection of recently developed and/or used techniques for equivalence-checking on infinite-state systems, and an up-to-date overview of existing results (as of September 2004)

Lengths May Break Privacy – Or How to Check for Equivalences with Length

Security protocols have been successfully analyzed using symbolic models, where messages are represented by terms and protocols by processes. Privacy properties like anonymity or untraceability are typically expressed as equivalence between processes. While some decision procedures have been proposed for automatically deciding process equivalence, all existing approaches abstract away the information an attacker may get when observing the length of messages. In this paper, we study process equivalence with length tests. We first show that, in the static case, almost all existing decidability results (for static equivalence) can be extended to cope with length tests. In the active case, we prove decidability of trace equivalence with length tests, for a bounded number of sessions and for standard primitives. Our result relies on a previous decidability result from Cheval et al (without length tests). Our procedure has been implemented and we have discovered a new flaw against privacy in the biometric passport protocol

Deciding equivalence-based properties using constraint solving

Formal methods have proved their usefulness for analyzing the security of protocols. Most existing results focus on trace properties like secrecy or authentication. There are however several security properties, which cannot be defined (or cannot be naturally defined) as trace properties and require a notion of behavioural equivalence. Typical examples are anonymity, privacy related properties or statements closer to security properties used in cryptography. In this paper, we consider three notions of equivalence defined in the applied pi calculus: observational equivalence, may-testing equivalence, and trace equivalence. First, we study the relationship between these three notions. We show that for determinate processes, observational equivalence actually coincides with trace equivalence, a notion simpler to reason with. We exhibit a large class of determinate processes, called simple processes, that capture most existing protocols and cryptographic primitives. While trace equivalence and may-testing equivalence seem very similar, we show that may-testing equivalence is actually strictly stronger than trace equivalence. We prove that the two notions coincide for image-finite processes, such as processes without replication. Second, we reduce the decidability of trace equivalence (for finite processes) to deciding symbolic equivalence between sets of constraint systems. For simple processes without replication and with trivial else branches, it turns out that it is actually sufficient to decide symbolic equivalence between pairs of positive constraint systems. Thanks to this reduction and relying on a result first proved by M. Baudet, this yields the first decidability result of observational equivalence for a general class of equational theories (for processes without else branch nor replication). Moreover, based on another decidability result for deciding equivalence between sets of constraint systems, we get decidability of trace equivalence for processes with else branch for standard primitives

Tau Be or not Tau Be? - A Perspective on Service Compatibility and Substitutability

One of the main open research issues in Service Oriented Computing is to propose automated techniques to analyse service interfaces. A first problem, called compatibility, aims at determining whether a set of services (two in this paper) can be composed together and interact with each other as expected. Another related problem is to check the substitutability of one service with another. These problems are especially difficult when behavioural descriptions (i.e., message calls and their ordering) are taken into account in service interfaces. Interfaces should capture as faithfully as possible the service behaviour to make their automated analysis possible while not exhibiting implementation details. In this position paper, we choose Labelled Transition Systems to specify the behavioural part of service interfaces. In particular, we show that internal behaviours (tau transitions) are necessary in these transition systems in order to detect subtle errors that may occur when composing a set of services together. We also show that tau transitions should be handled differently in the compatibility and substitutability problem: the former problem requires to check if the compatibility is preserved every time a tau transition is traversed in one interface, whereas the latter requires a precise analysis of tau branchings in order to make the substitution preserve the properties (e.g., a compatibility notion) which were ensured before replacement.Comment: In Proceedings WCSI 2010, arXiv:1010.233

A uniform framework for modelling nondeterministic, probabilistic, stochastic, or mixed processes and their behavioral equivalences

Labeled transition systems are typically used as behavioral models of concurrent processes, and the labeled transitions define the a one-step state-to-state reachability relation. This model can be made generalized by modifying the transition relation to associate a state reachability distribution, rather than a single target state, with any pair of source state and transition label. The state reachability distribution becomes a function mapping each possible target state to a value that expresses the degree of one-step reachability of that state. Values are taken from a preordered set equipped with a minimum that denotes unreachability. By selecting suitable preordered sets, the resulting model, called ULTraS from Uniform Labeled Transition System, can be specialized to capture well-known models of fully nondeterministic processes (LTS), fully probabilistic processes (ADTMC), fully stochastic processes (ACTMC), and of nondeterministic and probabilistic (MDP) or nondeterministic and stochastic (CTMDP) processes. This uniform treatment of different behavioral models extends to behavioral equivalences. These can be defined on ULTraS by relying on appropriate measure functions that expresses the degree of reachability of a set of states when performing single-step or multi-step computations. It is shown that the specializations of bisimulation, trace, and testing equivalences for the different classes of ULTraS coincide with the behavioral equivalences defined in the literature over traditional models