16,129 research outputs found
Closed-loop estimation of retinal network sensitivity reveals signature of efficient coding
According to the theory of efficient coding, sensory systems are adapted to
represent natural scenes with high fidelity and at minimal metabolic cost.
Testing this hypothesis for sensory structures performing non-linear
computations on high dimensional stimuli is still an open challenge. Here we
develop a method to characterize the sensitivity of the retinal network to
perturbations of a stimulus. Using closed-loop experiments, we explore
selectively the space of possible perturbations around a given stimulus. We
then show that the response of the retinal population to these small
perturbations can be described by a local linear model. Using this model, we
computed the sensitivity of the neural response to arbitrary temporal
perturbations of the stimulus, and found a peak in the sensitivity as a
function of the frequency of the perturbations. Based on a minimal theory of
sensory processing, we argue that this peak is set to maximize information
transmission. Our approach is relevant to testing the efficient coding
hypothesis locally in any context where no reliable encoding model is known
Do retinal ganglion cells project natural scenes to their principal subspace and whiten them?
Several theories of early sensory processing suggest that it whitens sensory
stimuli. Here, we test three key predictions of the whitening theory using
recordings from 152 ganglion cells in salamander retina responding to natural
movies. We confirm the previous finding that firing rates of ganglion cells are
less correlated compared to natural scenes, although significant correlations
remain. We show that while the power spectrum of ganglion cells decays less
steeply than that of natural scenes, it is not completely flattened. Finally,
we find evidence that only the top principal components of the visual stimulus
are transmitted.Comment: 2016 Asilomar Conference on Signals, Systems and Computer
Retinal oscillations carry visual information to cortex
Thalamic relay cells fire action potentials that transmit information from
retina to cortex. The amount of information that spike trains encode is usually
estimated from the precision of spike timing with respect to the stimulus.
Sensory input, however, is only one factor that influences neural activity. For
example, intrinsic dynamics, such as oscillations of networks of neurons, also
modulate firing pattern. Here, we asked if retinal oscillations might help to
convey information to neurons downstream. Specifically, we made whole-cell
recordings from relay cells to reveal retinal inputs (EPSPs) and thalamic
outputs (spikes) and analyzed these events with information theory. Our results
show that thalamic spike trains operate as two multiplexed channels. One
channel, which occupies a low frequency band (<30 Hz), is encoded by average
firing rate with respect to the stimulus and carries information about local
changes in the image over time. The other operates in the gamma frequency band
(40-80 Hz) and is encoded by spike time relative to the retinal oscillations.
Because these oscillations involve extensive areas of the retina, it is likely
that the second channel transmits information about global features of the
visual scene. At times, the second channel conveyed even more information than
the first.Comment: 21 pages, 10 figures, submitted to Frontiers in Systems Neuroscienc
Stimulus-dependent maximum entropy models of neural population codes
Neural populations encode information about their stimulus in a collective
fashion, by joint activity patterns of spiking and silence. A full account of
this mapping from stimulus to neural activity is given by the conditional
probability distribution over neural codewords given the sensory input. To be
able to infer a model for this distribution from large-scale neural recordings,
we introduce a stimulus-dependent maximum entropy (SDME) model---a minimal
extension of the canonical linear-nonlinear model of a single neuron, to a
pairwise-coupled neural population. The model is able to capture the
single-cell response properties as well as the correlations in neural spiking
due to shared stimulus and due to effective neuron-to-neuron connections. Here
we show that in a population of 100 retinal ganglion cells in the salamander
retina responding to temporal white-noise stimuli, dependencies between cells
play an important encoding role. As a result, the SDME model gives a more
accurate account of single cell responses and in particular outperforms
uncoupled models in reproducing the distributions of codewords emitted in
response to a stimulus. We show how the SDME model, in conjunction with static
maximum entropy models of population vocabulary, can be used to estimate
information-theoretic quantities like surprise and information transmission in
a neural population.Comment: 11 pages, 7 figure
Information recovery from rank-order encoded images
The time to detection of a visual stimulus by the primate eye is recorded at
100 – 150ms. This near instantaneous recognition is in spite of the considerable
processing required by the several stages of the visual pathway to recognise and
react to a visual scene. How this is achieved is still a matter of speculation.
Rank-order codes have been proposed as a means of encoding by the primate
eye in the rapid transmission of the initial burst of information from the sensory
neurons to the brain. We study the efficiency of rank-order codes in encoding
perceptually-important information in an image. VanRullen and Thorpe built a
model of the ganglion cell layers of the retina to simulate and study the viability
of rank-order as a means of encoding by retinal neurons. We validate their model
and quantify the information retrieved from rank-order encoded images in terms
of the visually-important information recovered. Towards this goal, we apply
the ‘perceptual information preservation algorithm’, proposed by Petrovic and
Xydeas after slight modification. We observe a low information recovery due
to losses suffered during the rank-order encoding and decoding processes. We
propose to minimise these losses to recover maximum information in minimum
time from rank-order encoded images. We first maximise information recovery by
using the pseudo-inverse of the filter-bank matrix to minimise losses during rankorder
decoding. We then apply the biological principle of lateral inhibition to
minimise losses during rank-order encoding. In doing so, we propose the Filteroverlap
Correction algorithm. To test the perfomance of rank-order codes in
a biologically realistic model, we design and simulate a model of the foveal-pit
ganglion cells of the retina keeping close to biological parameters. We use this
as a rank-order encoder and analyse its performance relative to VanRullen and
Thorpe’s retinal model
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