SourcererCC: Scaling Code Clone Detection to Big Code

Despite a decade of active research, there is a marked lack in clone detectors that scale to very large repositories of source code, in particular for detecting near-miss clones where significant editing activities may take place in the cloned code. We present SourcererCC, a token-based clone detector that targets three clone types, and exploits an index to achieve scalability to large inter-project repositories using a standard workstation. SourcererCC uses an optimized inverted-index to quickly query the potential clones of a given code block. Filtering heuristics based on token ordering are used to significantly reduce the size of the index, the number of code-block comparisons needed to detect the clones, as well as the number of required token-comparisons needed to judge a potential clone. We evaluate the scalability, execution time, recall and precision of SourcererCC, and compare it to four publicly available and state-of-the-art tools. To measure recall, we use two recent benchmarks, (1) a large benchmark of real clones, BigCloneBench, and (2) a Mutation/Injection-based framework of thousands of fine-grained artificial clones. We find SourcererCC has both high recall and precision, and is able to scale to a large inter-project repository (250MLOC) using a standard workstation.Comment: Accepted for publication at ICSE'16 (preprint, unrevised

A ring as a model of the main belt in planetary ephemerides

We assess the ability of a solid ring to model a global perturbation induced by several thousands of main-belt asteroids. The ring is first studied in an analytical framework that provides an estimate of all the ring's parameters excepting mass. In the second part, numerically estimated perturbations on the Earth-Mars, Earth-Venus, and Earth-Mercury distances induced by various subsets of the main-belt population are compared with perturbations induced by a ring. To account for large uncertainties in the asteroid masses, we obtain results from Monte Carlo experiments based on asteroid masses randomly generated according to available data and the statistical asteroid model. The radius of the ring is analytically estimated at 2.8 AU. A systematic comparison of the ring with subsets of the main belt shows that, after removing the 300 most perturbing asteroids, the total main-belt perturbation of the Earth-Mars distance reaches on average 246 m on the 1969-2010 time interval. A ring with appropriate mass is able to reduce this effect to 38 m. We show that, by removing from the main belt ~240 asteroids that are not necessarily the most perturbing ones, the corresponding total perturbation reaches on average 472 m, but the ring is able to reduce it down to a few meters, thus accounting for more than 99% of the total effect.Comment: 18 pages, accepted in A&

Assessment in anatomy

From an educational perspective, a very important problem is that of assessment, for establishing competency and as selection criterion for different professional purposes. Among the issues to be addressed are the methods of assessment and/or the type of tests, the range of scores, or the definition of honour degrees. The methods of assessment comprise such different forms such as the spotter examination, short or long essay questions, short answer questions, true-false questions, single best answer questions, multiple choice questions, extended match questions, or several forms of oral approaches such as viva voce examinations.Knowledge about this is important when assessing different educational objectives; assessing educational objectives from the cognitive domain will need different assessment instruments than assessing educational objectives from the psychomotor domain or even the affective domain.There is no golden rule, which type of assessment instrument or format will be the best in measuring certain educational objectives; but one has to respect that there is no assessment instrument, which is capable to assess educational objectives from all domains of educational objectives.Whereas the first two or three levels of progress can be assessed by well-structured written examinations such as multiple choice questions, or multiple answer questions, other and higher level progresses need other instruments, such as a thesis, or direct observation.This is no issue at all in assessment tools, where the students are required to select the appropriate answer from a given set of choices, as in true false questions, MCQ, EMQ, etc. The standard setting is done in these cases by the selection of the true answer

Parameterized Strings: Algorithms and Applications

The parameterized string (p-string), a generalization of the traditional string, is composed of constant and parameter symbols. A parameterized match (p-match) exists between two p-strings if the constants match exactly and there exists a bijection between the parameter symbols. Historically, p-strings have been employed in source code cloning, plagiarism detection, and structural similarity between biological sequences. By handling the intricacies of the parameterized suffix, we can efficiently address complex applications with data structures also reusable in traditional matching scenarios. In this dissertation, we extend data structures for p-strings (and variants) to address sophisticated string computations.;We introduce a taxonomy of classes for longest factor problems. Using this taxonomy, we show an interesting connection between the parameterized longest previous factor (pLPF) and familiar data structures in string theory, including the border array, prefix array, longest common prefix array, and analogous p-string data structures. Exploiting this connection, we construct a multitude of data structures using the same general pLPF framework.;Before this dissertation, the p-match was defined predominately by the matching between uncompressed p-strings. Here, we introduce the compressed parameterized pattern match to find all p-matches between a pattern and a text, using only the pattern and a compressed form of the text. We present parameterized compression (p-compression) as a new way to losslessly compress data to support p-matching. Experimentally, it is shown that p-compression is competitive with standard compression schemes. Using p-compression, we address the compressed p-match independent of the underlying compression routine.;Currently, p-string theory lacks the capability to support indeterminate symbols, a staple essential for applications involving inexact matching such as in music analysis. In this work, we propose and efficiently address two new types of p-matching with indeterminate symbols. (1) We introduce the indeterminate parameterized match (ip-match) to permit matching with indeterminate holes in a p-string. We support the ip-match by introducing data structures that extend the prefix array. (2) From a different perspective, the equivalence parameterized match (e-match) evolves the p-match to consider intra-alphabet symbol classes as equivalence classes. We propose a method to perform the e-match using the p-string suffix array framework, i.e. the parameterized suffix array (pSA) and parameterized longest common prefix array (pLCP). Historically, direct constructions of the pSA and pLCP have suffered from quadratic time bounds in the worst-case. Here, we introduce new p-string theory to efficiently construct the pSA/pLCP and break the theoretical worst-case time barrier.;Biological applications have become a classical use of p-string theory. Here, we introduce the structural border array to provide a lightweight solution to the biologically-oriented variant of the p-match, i.e. the structural match (s-match) on structural strings (s-strings). Following the s-match, we show how to use s-string suffix structures to support various pattern matching problems involving RNA secondary structures. Finally, we propose/construct the forward stem matrix (FSM), a data structure to access RNA stem structures, and we apply the FSM to the detection of hairpins and pseudoknots in an RNA sequence.;This dissertation advances the state-of-the-art in p-string theory by developing data structures for p-strings/s-strings and using p-string/s-string theory in new and old contexts to address various applications. Due to the flexibility of the p-string/s-string, the data structures and algorithms in this work are also applicable to the myriad of problems in the string community that involve traditional strings

Analysis of combinatorial search spaces for a class of NP-hard problems, An

2011 Spring.Includes bibliographical references.Given a finite but very large set of states X and a real-valued objective function ƒ defined on X, combinatorial optimization refers to the problem of finding elements of X that maximize (or minimize) ƒ. Many combinatorial search algorithms employ some perturbation operator to hill-climb in the search space. Such perturbative local search algorithms are state of the art for many classes of NP-hard combinatorial optimization problems such as maximum k-satisfiability, scheduling, and problems of graph theory. In this thesis we analyze combinatorial search spaces by expanding the objective function into a (sparse) series of basis functions. While most analyses of the distribution of function values in the search space must rely on empirical sampling, the basis function expansion allows us to directly study the distribution of function values across regions of states for combinatorial problems without the need for sampling. We concentrate on objective functions that can be expressed as bounded pseudo-Boolean functions which are NP-hard to solve in general. We use the basis expansion to construct a polynomial-time algorithm for exactly computing constant-degree moments of the objective function ƒ over arbitrarily large regions of the search space. On functions with restricted codomains, these moments are related to the true distribution by a system of linear equations. Given low moments supplied by our algorithm, we construct bounds of the true distribution of ƒ over regions of the space using a linear programming approach. A straightforward relaxation allows us to efficiently approximate the distribution and hence quickly estimate the count of states in a given region that have certain values under the objective function. The analysis is also useful for characterizing properties of specific combinatorial problems. For instance, by connecting search space analysis to the theory of inapproximability, we prove that the bound specified by Grover's maximum principle for the Max-Ek-Lin-2 problem is sharp. Moreover, we use the framework to prove certain configurations are forbidden in regions of the Max-3-Sat search space, supplying the first theoretical confirmation of empirical results by others. Finally, we show that theoretical results can be used to drive the design of algorithms in a principled manner by using the search space analysis developed in this thesis in algorithmic applications. First, information obtained from our moment retrieving algorithm can be used to direct a hill-climbing search across plateaus in the Max-k-Sat search space. Second, the analysis can be used to control the mutation rate on a (1+1) evolutionary algorithm on bounded pseudo-Boolean functions so that the offspring of each search point is maximized in expectation. For these applications, knowledge of the search space structure supplied by the analysis translates to significant gains in the performance of search

Keyword Search on RDF Graphs - A Query Graph Assembly Approach

Keyword search provides ordinary users an easy-to-use interface for querying RDF data. Given the input keywords, in this paper, we study how to assemble a query graph that is to represent user's query intention accurately and efficiently. Based on the input keywords, we first obtain the elementary query graph building blocks, such as entity/class vertices and predicate edges. Then, we formally define the query graph assembly (QGA) problem. Unfortunately, we prove theoretically that QGA is a NP-complete problem. In order to solve that, we design some heuristic lower bounds and propose a bipartite graph matching-based best-first search algorithm. The algorithm's time complexity is $O(k^{2l} \cdot l^{3l})$, where $l$ is the number of the keywords and $k$ is a tunable parameter, i.e., the maximum number of candidate entity/class vertices and predicate edges allowed to match each keyword. Although QGA is intractable, both $l$ and $k$ are small in practice. Furthermore, the algorithm's time complexity does not depend on the RDF graph size, which guarantees the good scalability of our system in large RDF graphs. Experiments on DBpedia and Freebase confirm the superiority of our system on both effectiveness and efficiency