Monte Carlo Simulations of Spin Glasses on Cell Broadband Engine

Several large-scale computational scientific problems require high-end computing systems to be solved. In the recent years, design of multi-core architectures delivers on a single chip tens or hundreds Gflops of peak computing performance, with high power dissipation efficiency, and it makes available computational power previously available only on high-end multi-processor systems. The aim of this Ph.D. thesis is to study the capability of multi-core processors for scientific programming, analyzing sustained performance, issues related to multicore programming, data distribution, synchronization, in order to define a set of guideline rules to optimize scientific applications for this class of architectures. As an example of multi-core processor, we consider the Cell Broadband Engine (CBE), developed by Sony, IBM and Toshiba. The CBE is one of the most powerful multi-core CPU current available, integrating eight cores and delivering a peak performance of 200 Gflops in single precision and 100 Gflops in double precision. As case of study, we analyze the performances of CBE for Monte Carlo simulations of the Edwards-Anderson Spin Glass model, a paradigm in theoretical and condensed matter physics, used to describe complex systems characterized by phase transitions (such as the para-ferro transition in magnets) or model “frustrated” dynamics. We descrive several strategies for the distribution of data set among on-chip and off-chip memories and propose analytic models to find out the balance between computational and memory access time as a function of both algorithmic and architectural parameters. We use the analytic models to set the parameters of the algorithm, like for example size of data structures and scheduling of operations, to optimize execution of Monte Carlo spin glass simulations on the CBE architecture

A Survey of Techniques for Architecting TLBs

“Translation lookaside buffer” (TLB) caches virtual to physical address translation information and is used in systems ranging from embedded devices to high-end servers. Since TLB is accessed very frequently and a TLB miss is extremely costly, prudent management of TLB is important for improving performance and energy efficiency of processors. In this paper, we present a survey of techniques for architecting and managing TLBs. We characterize the techniques across several dimensions to highlight their similarities and distinctions. We believe that this paper will be useful for chip designers, computer architects and system engineers

Parallel For Loops on Heterogeneous Resources

In recent years, Graphics Processing Units (GPUs) have piqued the interest of researchers in scientific computing. Their immense floating point throughput and massive parallelism make them ideal for not just graphical applications, but many general algorithms as well. Load balancing applications and taking advantage of all computational resources in a machine is a difficult challenge, especially when the resources are heterogeneous. This dissertation presents the clUtil library, which vastly simplifies developing OpenCL applications for heterogeneous systems. The core focus of this dissertation lies in clUtil\u27s ParallelFor construct and our novel PINA scheduler which can efficiently load balance work onto multiple GPUs and CPUs simultaneously

Memory-Aware Scheduling for Fixed Priority Hard Real-Time Computing Systems

As a major component of a computing system, memory has been a key performance and power consumption bottleneck in computer system design. While processor speeds have been kept rising dramatically, the overall computing performance improvement of the entire system is limited by how fast the memory can feed instructions/data to processing units (i.e. so-called memory wall problem). The increasing transistor density and surging access demands from a rapidly growing number of processing cores also significantly elevated the power consumption of the memory system. In addition, the interference of memory access from different applications and processing cores significantly degrade the computation predictability, which is essential to ensure timing specifications in real-time system design. The recent IC technologies (such as 3D-IC technology) and emerging data-intensive real-time applications (such as Virtual Reality/Augmented Reality, Artificial Intelligence, Internet of Things) further amplify these challenges. We believe that it is not simply desirable but necessary to adopt a joint CPU/Memory resource management framework to deal with these grave challenges. In this dissertation, we focus on studying how to schedule fixed-priority hard real-time tasks with memory impacts taken into considerations. We target on the fixed-priority real-time scheduling scheme since this is one of the most commonly used strategies for practical real-time applications. Specifically, we first develop an approach that takes into consideration not only the execution time variations with cache allocations but also the task period relationship, showing a significant improvement in the feasibility of the system. We further study the problem of how to guarantee timing constraints for hard real-time systems under CPU and memory thermal constraints. We first study the problem under an architecture model with a single core and its main memory individually packaged. We develop a thermal model that can capture the thermal interaction between the processor and memory, and incorporate the periodic resource sever model into our scheduling framework to guarantee both the timing and thermal constraints. We further extend our research to the multi-core architectures with processing cores and memory devices integrated into a single 3D platform. To our best knowledge, this is the first research that can guarantee hard deadline constraints for real-time tasks under temperature constraints for both processing cores and memory devices. Extensive simulation results demonstrate that our proposed scheduling can improve significantly the feasibility of hard real-time systems under thermal constraints

High performance cloud computing on multicore computers

The cloud has become a major computing platform, with virtualization being a key to allow applications to run and share the resources in the cloud. A wide spectrum of applications need to process large amounts of data at high speeds in the cloud, e.g., analyzing customer data to find out purchase behavior, processing location data to determine geographical trends, or mining social media data to assess brand sentiment. To achieve high performance, these applications create and use multiple threads running on multicore processors. However, existing virtualization technology cannot support the efficient execution of such applications on virtual machines, making them suffer poor and unstable performance in the cloud. Targeting multi-threaded applications, the dissertation analyzes and diagnoses their performance issues on virtual machines, and designs practical solutions to improve their performance. The dissertation makes the following contributions. First, the dissertation conducts extensive experiments with standard multicore applications, in order to evaluate the performance overhead on virtualization systems and diagnose the causing factors. Second, focusing on one main source of the performance overhead, excessive spinning, the dissertation designs and evaluates a holistic solution to make effective utilization of the hardware virtualization support in processors to reduce excessive spinning with low cost. Third, focusing on application scalability, which is the most important performance feature for multi-threaded applications, the dissertation models application scalability in virtual machines and analyzes how application scalability changes with virtualization and resource sharing. Based on the modeling and analysis, the dissertation identifies key application features and system factors that have impacts on application scalability, and reveals possible approaches for improving scalability. Forth, the dissertation explores one approach to improving application scalability by making fully utilization of virtual resources of each virtual machine. The general idea is to match the workload distribution among the virtual CPUs in a virtual machine and the virtual CPU resource of the virtual machine manager

Design Space Exploration and Resource Management of Multi/Many-Core Systems

The increasing demand of processing a higher number of applications and related data on computing platforms has resulted in reliance on multi-/many-core chips as they facilitate parallel processing. However, there is a desire for these platforms to be energy-efficient and reliable, and they need to perform secure computations for the interest of the whole community. This book provides perspectives on the aforementioned aspects from leading researchers in terms of state-of-the-art contributions and upcoming trends

Scalable system software for high performance large-scale applications

In the last decades, high-performance large-scale systems have been a fundamental tool for scientific discovery and engineering advances. The sustained growth of supercomputing performance and the concurrent reduction in cost have made this technology available for a large number of scientists and engineers working on many different problems. The design of next-generation supercomputers will include traditional HPC requirements as well as the new requirements to handle data-intensive computations. Data intensive applications will hence play an important role in a variety of fields, and are the current focus of several research trends in HPC. Due to the challenges of scalability and power efficiency, next-generation of supercomputers needs a redesign of the whole software stack. Being at the bottom of the software stack, system software is expected to change drastically to support the upcoming hardware and to meet new application requirements. This PhD thesis addresses the scalability of system software. The thesis start at the Operating System level: first studying general-purpose OS (ex. Linux) and then studying lightweight kernels (ex. CNK). Then, we focus on the runtime system: we implement a runtime system for distributed memory systems that includes many of the system services required by next-generation applications. Finally we focus on hardware features that can be exploited at user-level to improve applications performance, and potentially included into our advanced runtime system. The thesis contributions are the following: Operating System Scalability: We provide an accurate study of the scalability problems of modern Operating Systems for HPC. We design and implement a methodology whereby detailed quantitative information may be obtained for each OS noise event. We validate our approach by comparing it to other well-known standard techniques to analyze OS noise, such FTQ (Fixed Time Quantum). Evaluation of the address translation management for a lightweight kernel: we provide a performance evaluation of different TLB management approaches ¿ dynamic memory mapping, static memory mapping with replaceable TLB entries, and static memory mapping with fixed TLB entries (no TLB misses) on a IBM BlueGene/P system. Runtime System Scalability: We show that a runtime system can efficiently incorporate system services and improve scalability for a specific class of applications. We design and implement a full-featured runtime system and programming model to execute irregular appli- cations on a commodity cluster. The runtime library is called Global Memory and Threading library (GMT) and integrates a locality-aware Partitioned Global Address Space communication model with a fork/join program structure. It supports massive lightweight multi-threading, overlapping of communication and computation and small messages aggregation to tolerate network latencies. We compare GMT to other PGAS models, hand-optimized MPI code and custom architectures (Cray XMT) on a set of large scale irregular applications: breadth first search, random walk and concurrent hash map access. Our runtime system shows performance orders of magnitude higher than other solutions on commodity clusters and competitive with custom architectures. User-level Scalability Exploiting Hardware Features: We show the high complexity of low-level hardware optimizations for single applications, as a motivation to incorporate this logic into an adaptive runtime system. We evaluate the effects of controllable hardware-thread priority mechanism that controls the rate at which each hardware-thread decodes instruction on IBM POWER5 and POWER6 processors. Finally, we show how to effectively exploits cache locality and network-on-chip on the Tilera many-core architecture to improve intra-core scalability

On the design of architecture-aware algorithms for emerging applications

This dissertation maps various kernels and applications to a spectrum of programming models and architectures and also presents architecture-aware algorithms for different systems. The kernels and applications discussed in this dissertation have widely varying computational characteristics. For example, we consider both dense numerical computations and sparse graph algorithms. This dissertation also covers emerging applications from image processing, complex network analysis, and computational biology. We map these problems to diverse multicore processors and manycore accelerators. We also use new programming models (such as Transactional Memory, MapReduce, and Intel TBB) to address the performance and productivity challenges in the problems. Our experiences highlight the importance of mapping applications to appropriate programming models and architectures. We also find several limitations of current system software and architectures and directions to improve those. The discussion focuses on system software and architectural support for nested irregular parallelism, Transactional Memory, and hybrid data transfer mechanisms. We believe that the complexity of parallel programming can be significantly reduced via collaborative efforts among researchers and practitioners from different domains. This dissertation participates in the efforts by providing benchmarks and suggestions to improve system software and architectures.Ph.D.Committee Chair: Bader, David; Committee Member: Hong, Bo; Committee Member: Riley, George; Committee Member: Vuduc, Richard; Committee Member: Wills, Scot

Classification of Resilience Techniques Against Functional Errors at Higher Abstraction Layers of Digital Systems

Nanoscale technology nodes bring reliability concerns back to the center stage of digital system design. A systematic classification of approaches that increase system resilience in the presence of functional hardware (HW)-induced errors is presented, dealing with higher system abstractions, such as the (micro) architecture, the mapping, and platform software (SW). The field is surveyed in a systematic way based on nonoverlapping categories, which add insight into the ongoing work by exposing similarities and differences. HW and SW solutions are discussed in a similar fashion so that interrelationships become apparent. The presented categories are illustrated by representative literature examples to illustrate their properties. Moreover, it is demonstrated how hybrid schemes can be decomposed into their primitive components