EcoGIS – GIS tools for ecosystem approaches to fisheries management

Executive Summary: The EcoGIS project was launched in September 2004 to investigate how Geographic Information Systems (GIS), marine data, and custom analysis tools can better enable fisheries scientists and managers to adopt Ecosystem Approaches to Fisheries Management (EAFM). EcoGIS is a collaborative effort between NOAA’s National Ocean Service (NOS) and National Marine Fisheries Service (NMFS), and four regional Fishery Management Councils. The project has focused on four priority areas: Fishing Catch and Effort Analysis, Area Characterization, Bycatch Analysis, and Habitat Interactions. Of these four functional areas, the project team first focused on developing a working prototype for catch and effort analysis: the Fishery Mapper Tool. This ArcGIS extension creates time-and-area summarized maps of fishing catch and effort from logbook, observer, or fishery-independent survey data sets. Source data may come from Oracle, Microsoft Access, or other file formats. Feedback from beta-testers of the Fishery Mapper was used to debug the prototype, enhance performance, and add features. This report describes the four priority functional areas, the development of the Fishery Mapper tool, and several themes that emerged through the parallel evolution of the EcoGIS project, the concept and implementation of the broader field of Ecosystem Approaches to Management (EAM), data management practices, and other EAM toolsets. In addition, a set of six succinct recommendations are proposed on page 29. One major conclusion from this work is that there is no single “super-tool” to enable Ecosystem Approaches to Management; as such, tools should be developed for specific purposes with attention given to interoperability and automation. Future work should be coordinated with other GIS development projects in order to provide “value added” and minimize duplication of efforts. In addition to custom tools, the development of cross-cutting Regional Ecosystem Spatial Databases will enable access to quality data to support the analyses required by EAM. GIS tools will be useful in developing Integrated Ecosystem Assessments (IEAs) and providing pre- and post-processing capabilities for spatially-explicit ecosystem models. Continued funding will enable the EcoGIS project to develop GIS tools that are immediately applicable to today’s needs. These tools will enable simplified and efficient data query, the ability to visualize data over time, and ways to synthesize multidimensional data from diverse sources. These capabilities will provide new information for analyzing issues from an ecosystem perspective, which will ultimately result in better understanding of fisheries and better support for decision-making. (PDF file contains 45 pages.

PICES Press, Vol. 20, No. 1, Winter 2012

•2011 PICES Science: A Note from the Science Board Chairman (pp. 1-6) •2011 PICES Awards (pp. 7-9) •Beyond the Terrible Disaster of the Great East Japan Earthquake (pp. 10-12) •A New Era of PICES-ICES Scientific Cooperation (p. 13) •New PICES Jellyfish Working Group Formed (pp. 14-15) •PICES Working Group on North Pacific Climate Variability (pp. 16-18) •Final U.S. GLOBEC Symposium and Celebration (pp. 19-25) •2011 PICES Rapid Assessment Survey (pp. 26-29) •Introduction to Rapid Assessment Survey Methodologies for Detecting Non-indigenous Marine Species (pp. 30-31) •The 7th International Conference on Marine Bioinvasions (pp. 32-33) •NOWPAP/PICES/WESTPAC Training Course on Remote Sensing Data Analysis (pp. 34-36) •PICES-2011 Workshop on “Trends in Marine Contaminants and their Effects in a Changing Ocean” (pp. 37-39) •The State of the Western North Pacific in the First Half of 2011 (pp. 40-42) •Yeosu Symposium theme sessions (p. 42) •The Bering Sea: Current Status and Recent Events (pp. 43-44) •News of the Northeast Pacific Ocean (pp. 45-47) •Recent and Upcoming PICES Publications (p. 47) •New leadership for the PICES Fishery Science Committee (p. 48

The Hierarchic treatment of marine ecological information from spatial networks of benthic platforms

Measuring biodiversity simultaneously in different locations, at different temporal scales, and over wide spatial scales is of strategic importance for the improvement of our understanding of the functioning of marine ecosystems and for the conservation of their biodiversity. Monitoring networks of cabled observatories, along with other docked autonomous systems (e.g., Remotely Operated Vehicles [ROVs], Autonomous Underwater Vehicles [AUVs], and crawlers), are being conceived and established at a spatial scale capable of tracking energy fluxes across benthic and pelagic compartments, as well as across geographic ecotones. At the same time, optoacoustic imaging is sustaining an unprecedented expansion in marine ecological monitoring, enabling the acquisition of new biological and environmental data at an appropriate spatiotemporal scale. At this stage, one of the main problems for an effective application of these technologies is the processing, storage, and treatment of the acquired complex ecological information. Here, we provide a conceptual overview on the technological developments in the multiparametric generation, storage, and automated hierarchic treatment of biological and environmental information required to capture the spatiotemporal complexity of a marine ecosystem. In doing so, we present a pipeline of ecological data acquisition and processing in different steps and prone to automation. We also give an example of population biomass, community richness and biodiversity data computation (as indicators for ecosystem functionality) with an Internet Operated Vehicle (a mobile crawler). Finally, we discuss the software requirements for that automated data processing at the level of cyber-infrastructures with sensor calibration and control, data banking, and ingestion into large data portals.Peer ReviewedPostprint (published version

PICES Press, Vol. 18, No. 1, Winter 2010

•Major Outcomes from the 2009 PICES Annual Meeting: A Note from the Chairman (pp. 1-3, 8) •PICES Science – 2009 (pp. 4-8) •2009 PICES Awards (pp. 9-10) •New Chairmen in PICES (pp. 11-15) •PICES Interns (p. 15) •The State of the Western North Pacific in the First Half of 2009 (pp. 16-17, 27) •The State of the Northeast Pacific in 2009 (pp. 18-19) •The Bering Sea: Current Status and Recent Events (pp. 20-21) •2009 PICES Summer School on “Satellite Oceanography for the Earth Environment” (pp. 22-25) •2009 International Conference on “Marine Bioinvasions” (pp. 26-27) •A New PICES Working Group Holds Workshop and Meeting in Jeju Island (pp. 28-29) •The Second Marine Ecosystem Model Inter-comparison Workshop (pp. 30-32) •ICES/PICES/UNCOVER Symposium on “Rebuilding Depleted Fish Stocks – Biology, Ecology, Social Science and Management Strategies” (pp. 33-35) •2009 North Pacific Synthesis Workshop (pp. 36-37) •2009 PICES Rapid Assessment Survey (pp. 38-40

Seafloor characterization using airborne hyperspectral co-registration procedures independent from attitude and positioning sensors

The advance of remote-sensing technology and data-storage capabilities has progressed in the last decade to commercial multi-sensor data collection. There is a constant need to characterize, quantify and monitor the coastal areas for habitat research and coastal management. In this paper, we present work on seafloor characterization that uses hyperspectral imagery (HSI). The HSI data allows the operator to extend seafloor characterization from multibeam backscatter towards land and thus creates a seamless ocean-to-land characterization of the littoral zone

Advancing national greenhouse gas inventories for agriculture in developing countries : improving activity data, emission factors and software technology

Peer reviewedPublisher PD

PICES Press, Vol. 20, No. 2, Summer 2012

•The 2012 Inter-sessional Science Board Meeting: A Note from Science Board Chairman (pp. 1-4) ◾PICES Interns (p. 4) ◾2012 Inter-sessional Workshop on a Roadmap for FUTURE (pp. 5-8) ◾Second Symposium on “Effects of Climate Change on the World’s Oceans” (pp. 9-13) ◾2012 Yeosu Workshop on “Framework for Ocean Observing” (pp. 14-15) ◾2012 Yeosu Workshop on “Climate Change Projections” (pp. 16-17) ◾2012 Yeosu Workshop on “Coastal Blue Carbon” (pp. 18-20) ◾Polar Comparisons: Summary of 2012 Yeosu Workshop (pp. 21-23) ◾2012 Yeosu Workshop on “Climate Change and Range Shifts in the Oceans" (pp. 24-27) ◾2012 Yeosu Workshop on “Beyond Dispersion” (pp. 28-30) ◾2012 Yeosu Workshop on “Public Perception of Climate Change” (pp. 31, 50) ◾PICES Working Group 20: Accomplishments and Legacy (pp. 32-33) ◾The State of the Western North Pacific in the Second Half of 2011 (pp. 34-35) ◾Another Cold Winter in the Gulf of Alaska (pp. 36-37) ◾The Bering Sea: Current Status and Recent Events (pp. 38-40) ◾PICES/ICES 2012 Conference for Early Career Marine Scientists (pp. 41-43) ◾Completion of the PICES Seafood Safety Project – Indonesia (pp. 44-46) ◾Oceanography Improves Salmon Forecasts (p. 47) ◾2012 GEOHAB Open Science Meeting (p. 48-50) ◾Shin-ichi Ito awarded 2011 Uda Prize (p. 50

Complex Systems: A Survey

A complex system is a system composed of many interacting parts, often called agents, which displays collective behavior that does not follow trivially from the behaviors of the individual parts. Examples include condensed matter systems, ecosystems, stock markets and economies, biological evolution, and indeed the whole of human society. Substantial progress has been made in the quantitative understanding of complex systems, particularly since the 1980s, using a combination of basic theory, much of it derived from physics, and computer simulation. The subject is a broad one, drawing on techniques and ideas from a wide range of areas. Here I give a survey of the main themes and methods of complex systems science and an annotated bibliography of resources, ranging from classic papers to recent books and reviews.Comment: 10 page