Module hierarchy and centralisation in the anatomy and dynamics of human cortex

Systems neuroscience has recently unveiled numerous fundamental features of the macroscopic architecture of the human brain, the connectome, and we are beginning to understand how characteristics of brain dynamics emerge from the underlying anatomical connectivity. The current work utilises complex network analysis on a high-resolution structural connectivity of the human cortex to identify generic organisation principles, such as centralised, modular and hierarchical properties, as well as specific areas that are pivotal in shaping cortical dynamics and function. After confirming its small-world and modular architecture, we characterise the cortex’ multilevel modular hierarchy, which appears to be reasonably centralised towards the brain’s strong global structural core. The potential functional importance of the core and hub regions is assessed by various complex network metrics, such as integration measures, network vulnerability and motif spectrum analysis. Dynamics facilitated by the large-scale cortical topology is explored by simulating coupled oscillators on the anatomical connectivity. The results indicate that cortical connectivity appears to favour high dynamical complexity over high synchronizability. Taking the ability to entrain other brain regions as a proxy for the threat posed by a potential epileptic focus in a given region, we also show that epileptic foci in topologically more central areas should pose a higher epileptic threat than foci in more peripheral areas. To assess the influence of macroscopic brain anatomy in shaping global resting state dynamics on slower time scales, we compare empirically obtained functional connectivity data with data from simulating dynamics on the structural connectivity. Despite considerable micro-scale variability between the two functional connectivities, our simulations are able to approximate the profile of the empirical functional connectivity. Our results outline the combined characteristics a hierarchically modular and reasonably centralised macroscopic architecture of the human cerebral cortex, which, through these topological attributes, appears to facilitate highly complex dynamics and fundamentally shape brain function

Complexity Science in Human Change

This reprint encompasses fourteen contributions that offer avenues towards a better understanding of complex systems in human behavior. The phenomena studied here are generally pattern formation processes that originate in social interaction and psychotherapy. Several accounts are also given of the coordination in body movements and in physiological, neuronal and linguistic processes. A common denominator of such pattern formation is that complexity and entropy of the respective systems become reduced spontaneously, which is the hallmark of self-organization. The various methodological approaches of how to model such processes are presented in some detail. Results from the various methods are systematically compared and discussed. Among these approaches are algorithms for the quantification of synchrony by cross-correlational statistics, surrogate control procedures, recurrence mapping and network models.This volume offers an informative and sophisticated resource for scholars of human change, and as well for students at advanced levels, from graduate to post-doctoral. The reprint is multidisciplinary in nature, binding together the fields of medicine, psychology, physics, and neuroscience

Enhanced Living Environments

This open access book was prepared as a Final Publication of the COST Action IC1303 “Algorithms, Architectures and Platforms for Enhanced Living Environments (AAPELE)”. The concept of Enhanced Living Environments (ELE) refers to the area of Ambient Assisted Living (AAL) that is more related with Information and Communication Technologies (ICT). Effective ELE solutions require appropriate ICT algorithms, architectures, platforms, and systems, having in view the advance of science and technology in this area and the development of new and innovative solutions that can provide improvements in the quality of life for people in their homes and can reduce the financial burden on the budgets of the healthcare providers. The aim of this book is to become a state-of-the-art reference, discussing progress made, as well as prompting future directions on theories, practices, standards, and strategies related to the ELE area. The book contains 12 chapters and can serve as a valuable reference for undergraduate students, post-graduate students, educators, faculty members, researchers, engineers, medical doctors, healthcare organizations, insurance companies, and research strategists working in this area

A Comprehensive Workflow for General-Purpose Neural Modeling with Highly Configurable Neuromorphic Hardware Systems

In this paper we present a methodological framework that meets novel requirements emerging from upcoming types of accelerated and highly configurable neuromorphic hardware systems. We describe in detail a device with 45 million programmable and dynamic synapses that is currently under development, and we sketch the conceptual challenges that arise from taking this platform into operation. More specifically, we aim at the establishment of this neuromorphic system as a flexible and neuroscientifically valuable modeling tool that can be used by non-hardware-experts. We consider various functional aspects to be crucial for this purpose, and we introduce a consistent workflow with detailed descriptions of all involved modules that implement the suggested steps: The integration of the hardware interface into the simulator-independent model description language PyNN; a fully automated translation between the PyNN domain and appropriate hardware configurations; an executable specification of the future neuromorphic system that can be seamlessly integrated into this biology-to-hardware mapping process as a test bench for all software layers and possible hardware design modifications; an evaluation scheme that deploys models from a dedicated benchmark library, compares the results generated by virtual or prototype hardware devices with reference software simulations and analyzes the differences. The integration of these components into one hardware-software workflow provides an ecosystem for ongoing preparative studies that support the hardware design process and represents the basis for the maturity of the model-to-hardware mapping software. The functionality and flexibility of the latter is proven with a variety of experimental results

Finding the pathology of major depression through effects on gene interaction networks

The disease signature of major depressive disorder is distributed across multiple physical scales and investigative specialties, including genes, cells and brain regions. No single mechanism or pathway currently implicated in depression can reproduce its diverse clinical presentation, which compounds the difficulty in finding consistently disrupted molecular functions. We confront these key roadblocks to depression research - multi-scale and multi-factor pathology - by conducting parallel investigations at the levels of genes, neurons and brain regions, using transcriptome networks to identify collective patterns of dysfunction. Our findings highlight how the collusion of multi-system deficits can form a broad-based, yet variable pathology behind the depressed phenotype. For instance, in a variant of the classic lethality-centrality relationship, we show that in neuropsychiatric disorders including major depression, differentially expressed genes are pushed out to the periphery of gene networks. At the level of cellular function, we develop a molecular signature of depression based on cross-species analysis of human and mouse microarrays from depression-affected areas, and show that these genes form a tight module related to oligodendrocyte function and neuronal growth/structure. At the level of brain-region communication, we find a set of genes and hormones associated with the loss of feedback between the amygdala and anterior cingulate cortex, based on a novel assay of interregional expression synchronization termed "gene coordination". These results indicate that in the absence of a single pathology, depression may be created by dysynergistic effects among genes, cell-types and brain regions, in what we term the "floodgate" model of depression. Beyond our specific biological findings, these studies indicate that gene interaction networks are a coherent framework in which to understand the faint expression changes found in depression and complex neuropsychiatric disorders

Critical Programming: Toward a Philosophy of Computing

Beliefs about the relationship between human beings and computing machines and their destinies have alternated from heroic counterparts to conspirators of automated genocide, from apocalyptic extinction events to evolutionary cyborg convergences. Many fear that people are losing key intellectual and social abilities as tasks are offloaded to the everywhere of the built environment, which is developing a mind of its own. If digital technologies have contributed to forming a dumbest generation and ushering in a robotic moment, we all have a stake in addressing this collective intelligence problem. While digital humanities continue to flourish and introduce new uses for computer technologies, the basic modes of philosophical inquiry remain in the grip of print media, and default philosophies of computing prevail, or experimental ones propagate false hopes. I cast this as-is situation as the post-postmodern network dividual cyborg, recognizing that the rational enlightenment of modernism and regressive subjectivity of postmodernism now operate in an empire of extended mind cybernetics combined with techno-capitalist networks forming societies of control. Recent critical theorists identify a justificatory scheme foregrounding participation in projects, valorizing social network linkages over heroic individualism, and commending flexibility and adaptability through life long learning over stable career paths. It seems to reify one possible, contingent configuration of global capitalism as if it was the reflection of a deterministic evolution of commingled technogenesis and synaptogenesis. To counter this trend I offer a theoretical framework to focus on the phenomenology of software and code, joining social critiques with textuality and media studies, the former proposing that theory be done through practice, and the latter seeking to understand their schematism of perceptibility by taking into account engineering techniques like time axis manipulation. The social construction of technology makes additional theoretical contributions dispelling closed world, deterministic historical narratives and requiring voices be given to the engineers and technologists that best know their subject area. This theoretical slate has been recently deployed to produce rich histories of computing, networking, and software, inform the nascent disciplines of software studies and code studies, as well as guide ethnographers of software development communities. I call my syncretism of these approaches the procedural rhetoric of diachrony in synchrony, recognizing that multiple explanatory layers operating in their individual temporal and physical orders of magnitude simultaneously undergird post-postmodern network phenomena. Its touchstone is that the human-machine situation is best contemplated by doing, which as a methodology for digital humanities research I call critical programming. Philosophers of computing explore working code places by designing, coding, and executing complex software projects as an integral part of their intellectual activity, reflecting on how developing theoretical understanding necessitates iterative development of code as it does other texts, and how resolving coding dilemmas may clarify or modify provisional theories as our minds struggle to intuit the alien temporalities of machine processes

Neural oscillatory signatures of auditory and audiovisual illusions

Questions of the relationship between human perception and brain activity can be approached from different perspectives: in the first, the brain is mainly regarded as a recipient and processor of sensory data. The corresponding research objective is to establish mappings of neural activity patterns and external stimuli. Alternatively, the brain can be regarded as a self-organized dynamical system, whose constantly changing state affects how incoming sensory signals are processed and perceived. The research reported in this thesis can chiefly be located in the second framework, and investigates the relationship between oscillatory brain activity and the perception of ambiguous stimuli. Oscillations are here considered as a mechanism for the formation of transient neural assemblies, which allows efficient information transfer. While the relevance of activity in distinct frequency bands for auditory and audiovisual perception is well established, different functional architectures of sensory integration can be derived from the literature. This dissertation therefore aims to further clarify the role of oscillatory activity in the integration of sensory signals towards unified perceptual objects, using illusion paradigms as tools of study. In study 1, we investigate the role of low frequency power modulations and phase alignment in auditory object formation. We provide evidence that auditory restoration is associated with a power reduction, while the registration of an additional object is reflected by an increase in phase locking. In study 2, we analyze oscillatory power as a predictor of auditory influence on visual perception in the sound-induced flash illusion. We find that increased beta-/ gamma-band power over occipitotemporal electrodes shortly before stimulus onset predicts the illusion, suggesting a facilitation of processing in polymodal circuits. In study 3, we address the question of whether visual influence on auditory perception in the ventriloquist illusion is reflected in primary sensory or higher-order areas. We establish an association between reduced theta-band power in mediofrontal areas and the occurrence of illusion, which indicates a top-down influence on sensory decision-making. These findings broaden our understanding of the functional relevance of neural oscillations by showing that different processing modes, which are reflected in specific spatiotemporal activity patterns, operate in different instances of sensory integration.Fragen nach dem Zusammenhang zwischen menschlicher Wahrnehmung und Hirnaktivität können aus verschiedenen Perspektiven adressiert werden: in der einen wird das Gehirn hauptsächlich als Empfänger und Verarbeiter von sensorischen Daten angesehen. Das entsprechende Forschungsziel wäre eine Zuordnung von neuronalen Aktivitätsmustern zu externen Reizen. Dieser Sichtweise gegenüber steht ein Ansatz, der das Gehirn als selbstorganisiertes dynamisches System begreift, dessen sich ständig verändernder Zustand die Verarbeitung und Wahrnehmung von sensorischen Signalen beeinflusst. Die Arbeiten, die in dieser Dissertation zusammengefasst sind, können vor allem in der zweitgenannten Forschungsrichtung verortet werden, und untersuchen den Zusammenhang zwischen oszillatorischer Hirnaktivität und der Wahrnehmung von mehrdeutigen Stimuli. Oszillationen werden hier als ein Mechanismus für die Formation von transienten neuronalen Zusammenschlüssen angesehen, der effizienten Informationstransfer ermöglicht. Obwohl die Relevanz von Aktivität in verschiedenen Frequenzbändern für auditorische und audiovisuelle Wahrnehmung gut belegt ist, können verschiedene funktionelle Architekturen der sensorischen Integration aus der Literatur abgeleitet werden. Das Ziel dieser Dissertation ist deshalb eine Präzisierung der Rolle oszillatorischer Aktivität bei der Integration von sensorischen Signalen zu einheitlichen Wahrnehmungsobjekten mittels der Nutzung von Illusionsparadigmen. In der ersten Studie untersuchen wir die Rolle von Leistung und Phasenanpassung in niedrigen Frequenzbändern bei der Formation von auditorischen Objekten. Wir zeigen, dass die Wiederherstellung von Tönen mit einer Reduktion der Leistung zusammenhängt, während die Registrierung eines zusätzlichen Objekts durch einen erhöhten Phasenangleich widergespiegelt wird. In der zweiten Studie analysieren wir oszillatorische Leistung als Prädiktor von auditorischem Einfluss auf visuelle Wahrnehmung in der sound-induced flash illusion. Wir stellen fest, dass erhöhte Beta-/Gamma-Band Leistung über occipitotemporalen Elektroden kurz vor der Reizdarbietung das Auftreten der Illusion vorhersagt, was auf eine Begünstigung der Verarbeitung in polymodalen Arealen hinweist. In der dritten Studie widmen wir uns der Frage, ob ein visueller Einfluss auf auditorische Wahrnehmung in der ventriloquist illusion sich in primären sensorischen oder übergeordneten Arealen widerspiegelt. Wir weisen einen Zusammenhang von reduzierter Theta-Band Leistung in mediofrontalen Arealen und dem Auftreten der Illusion nach, was einen top-down Einfluss auf sensorische Entscheidungsprozesse anzeigt. Diese Befunde erweitern unser Verständnis der funktionellen Bedeutung neuronaler Oszillationen, indem sie aufzeigen, dass verschiedene Verarbeitungsmodi, die sich in spezifischen räumlich-zeitlichen Aktivitätsmustern spiegeln, in verschiedenen Phänomenen von sensorischer Integration wirksam sind