Using ontology in query answering systems: Scenarios, requirements and challenges

Equipped with the ultimate query answering system, computers would finally be in a position to address all our information needs in a natural way. In this paper, we describe how Language and Computing nv (L&C), a developer of ontology-based natural language understanding systems for the healthcare domain, is working towards the ultimate Question Answering (QA) System for healthcare workers. L&C’s company strategy in this area is to design in a step-by-step fashion the essential components of such a system, each component being designed to solve some one part of the total problem and at the same time reflect well-defined needs on the prat of our customers. We compare our strategy with the research roadmap proposed by the Question Answering Committee of the National Institute of Standards and Technology (NIST), paying special attention to the role of ontology

Significant achievements in the planetary geology program, 1980

Recent developments in planetology research as reported at the 1980 NASA Planetology Program Principal Investigators meeting are summarized. Important developments are summarized in topics ranging from solar system evolution and comparative planetology to geologic processes active on other planetary bodies

Significant achievements in the planetary geology program, 1981

Recent developments in planetology research as reported at the 1981 NASA Planetary Geology Principal Investigators meeting are summarized. The evolution of the solar system, comparative planetology, and geologic processes active on other planets are considered. Galilean satellites and small bodies, Venus, geochemistry and regoliths, volcanic and aeolian processes and landforms, fluvial and periglacial processes, and planetary impact cratering, remote sensing, and cartography are discussed

A modular, open-source information extraction framework for identifying clinical concepts and processes of care in clinical narratives

In this thesis, a synthesis is presented of the knowledge models required by clinical informa- tion systems that provide decision support for longitudinal processes of care. Qualitative research techniques and thematic analysis are novelly applied to a systematic review of the literature on the challenges in implementing such systems, leading to the development of an original conceptual framework. The thesis demonstrates how these process-oriented systems make use of a knowledge base derived from workflow models and clinical guidelines, and argues that one of the major barriers to implementation is the need to extract explicit and implicit information from diverse resources in order to construct the knowledge base. Moreover, concepts in both the knowledge base and in the electronic health record (EHR) must be mapped to a common ontological model. However, the majority of clinical guideline information remains in text form, and much of the useful clinical information residing in the EHR resides in the free text fields of progress notes and laboratory reports. In this thesis, it is shown how natural language processing and information extraction techniques provide a means to identify and formalise the knowledge components required by the knowledge base. Original contributions are made in the development of lexico-syntactic patterns and the use of external domain knowledge resources to tackle a variety of information extraction tasks in the clinical domain, such as recognition of clinical concepts, events, temporal relations, term disambiguation and abbreviation expansion. Methods are developed for adapting existing tools and resources in the biomedical domain to the processing of clinical texts, and approaches to improving the scalability of these tools are proposed and evalu- ated. These tools and techniques are then combined in the creation of a novel approach to identifying processes of care in the clinical narrative. It is demonstrated that resolution of coreferential and anaphoric relations as narratively and temporally ordered chains provides a means to extract linked narrative events and processes of care from clinical notes. Coreference performance in discharge summaries and progress notes is largely dependent on correct identification of protagonist chains (patient, clinician, family relation), pronominal resolution, and string matching that takes account of experiencer, temporal, spatial, and anatomical context; whereas for laboratory reports additional, external domain knowledge is required. The types of external knowledge and their effects on system performance are identified and evaluated. Results are compared against existing systems for solving these tasks and are found to improve on them, or to approach the performance of recently reported, state-of-the- art systems. Software artefacts developed in this research have been made available as open-source components within the General Architecture for Text Engineering framework

Acronyms as an integral part of multi–word term recognition - A token of appreciation

Term conflation is the process of linking together different variants of the same term. In automatic term recognition approaches, all term variants should be aggregated into a single normalized term representative, which is associated with a single domain–specific concept as a latent variable. In a previous study, we described FlexiTerm, an unsupervised method for recognition of multi–word terms from a domain–specific corpus. It uses a range of methods to normalize three types of term variation – orthographic, morphological and syntactic variation. Acronyms, which represent a highly productive type of term variation, were not supported. In this study, we describe how the functionality of FlexiTerm has been extended to recognize acronyms and incorporate them into the term conflation process. The main contribution of this study is not acronym recognition per se, but rather its integration with other types of term variation into the term conflation process. We evaluated the effects of term conflation in the context of information retrieval as one of its most prominent applications. On average, relative recall increased by 32 percent points, whereas index compression factor increased by 7 percent points. Therefore, evidence suggests that integration of acronyms provides non–trivial improvement of term conflation

Negation detection and word sense disambiguation in digital archaeology reports for the purposes of semantic annotation

The paper presents the role and contribution of Natural Language Processing Techniques, in particular Negation Detection and Word Sense Disambiguation in the process of Semantic Annotation of Archaeological Grey Literature. Archaeological reports contain a great deal of information that conveys facts and findings in different ways. This kind of information is highly relevant to the research and analysis of archaeological evidence but at the same time can be a hindrance for the accurate indexing of documents with respect to positive assertion