Research on Improving Reliability, Energy Efficiency and Scalability in Distributed and Parallel File Systems

With the increasing popularity of cloud computing and Big data applications, current data centers are often required to manage petabytes or exabytes of data. To store this huge amount of data, thousands or tens of thousands storage nodes are required at a single site. This imposes three major challenges for storage system designers: (1) Reliability---node failure in these datacenters is a normal occurrence rather than a rare situation. This makes data reliability a great concern. (2) Energy efficiency---a data center can consume up to 100 times more energy than a standard office building. More than 10% of this energy consumption can be attributed to storage systems. Thus, reducing the energy consumption of the storage system is key to reducing the overall consumption of the data center. (3) Scalability---with the continuously increasing size of data, maintaining the scalability of the storage systems is essential. That is, the expansion of the storage system should be completed efficiently and without limitations on the total number of storage nodes or performance. This thesis proposes three ways to improve the above three key features for current large-scale storage systems. Firstly, we define the problem of reverse lookup , namely finding the list of objects (blocks) for a failed node. As the first step of failure recovery, this process is directly related to the recovery/reconstruction time. While existing solutions use metadata traversal or data distribution reversing methods for reverse lookup, which are either time consuming or expensive, a deterministic block placement can achieve fast and efficient reverse lookup. However, the deterministic placement solutions are designed for centralized, small-scale storage architectures such as RAID etc.. Due to their lacking of scalability, they cannot be directly applied in large-scale storage systems. In this paper, we propose Group-Shifted Declustering (G-SD), a deterministic data layout for multi-way replication. G-SD addresses the scalability issue of our previous Shifted Declustering layout and supports fast and efficient reverse lookup. Secondly, we define a problem: how to balance the performance, energy, and recovery in degradation mode for an energy efficient storage system? . While extensive researches have been proposed to tradeoff performance for energy efficiency under normal mode, the system enters degradation mode when node failure occurs, in which node reconstruction is initiated. This very process requires a number of disks to be spun up and requires a substantial amount of I/O bandwidth, which will not only compromise energy efficiency but also performance. Without considering the I/O bandwidth contention between recovery and performance, we find that the current energy proportional solutions cannot answer this question accurately. This thesis present PERP, a mathematical model to minimize the energy consumption for a storage systems with respect to performance and recovery. PERP answers this problem by providing the accurate number of nodes and the assigned recovery bandwidth at each time frame. Thirdly, current distributed file systems such as Google File System(GFS) and Hadoop Distributed File System (HDFS), employ a pseudo-random method for replica distribution and a centralized lookup table (block map) to record all replica locations. This lookup table requires a large amount of memory and consumes a considerable amount of CPU/network resources on the metadata server. With the booming size of Big Data , the metadata server becomes a scalability and performance bottleneck. While current approaches such as HDFS Federation attempt to horizontally extend scalability by allowing multiple metadata servers, we believe a more promising optimization option is to vertically scale up each metadata server. We propose Deister, a novel block management scheme that builds on top of a deterministic declustering distribution method Intersected Shifted Declustering (ISD). Thus both replica distribution and location lookup can be achieved without a centralized lookup table

A Novel Completely Local Repairable Code Algorithm Based on Erasure Code

Hadoop Distributed File System (HDFS) is widely used in massive data storage. Because of the disadvantage of the multi-copy strategy, the hardware expansion of HDFS cannot keep up with the continuous volume of big data. Now, the traditional data replication strategy has been gradually replaced by Erasure Code due to its smaller redundancy rate and storage overhead. However, compared with replicas, Erasure Code needs to read a certain amount of data blocks during the process of data recovery, resulting in a large amount of overhead for I/O and network. Based on the Reed-Solomon (RS) algorithm, we propose a novel Completely Local Repairable Code (CLRC) algorithm. By grouping RS coded blocks and generating local check blocks, CLRC algorithm can optimize the locality of the RS algorithm, which can reduce the cost of data recovery. Evaluations show that the CLRC algorithm can reduce the bandwidth and I/O consumption during the process of data recovery when a single block is damaged. What\u27s more, the cost of decoding time is only 59% of the RS algorithm

Efficient data reliability management of cloud storage systems for big data applications

Cloud service providers are consistently striving to provide efficient and reliable service, to their client's Big Data storage need. Replication is a simple and flexible method to ensure reliability and availability of data. However, it is not an efficient solution for Big Data since it always scales in terabytes and petabytes. Hence erasure coding is gaining traction despite its shortcomings. Deploying erasure coding in cloud storage confronts several challenges like encoding/decoding complexity, load balancing, exponential resource consumption due to data repair and read latency. This thesis has addressed many challenges among them. Even though data durability and availability should not be compromised for any reason, client's requirements on read performance (access latency) may vary with the nature of data and its access pattern behaviour. Access latency is one of the important metrics and latency acceptance range can be recorded in the client's SLA. Several proactive recovery methods, for erasure codes are proposed in this research, to reduce resource consumption due to recovery. Also, a novel cache based solution is proposed to mitigate the access latency issue of erasure coding

Exploration of Erasure-Coded Storage Systems for High Performance, Reliability, and Inter-operability

With the unprecedented growth of data and the use of low commodity drives in local disk-based storage systems and remote cloud-based servers has increased the risk of data loss and an overall increase in the user perceived system latency. To guarantee high reliability, replication has been the most popular choice for decades, because of simplicity in data management. With the high volume of data being generated every day, the storage cost of replication is very high and is no longer a viable approach. Erasure coding is another approach of adding redundancy in storage systems, which provides high reliability at a fraction of the cost of replication. However, the choice of erasure codes being used affects the storage efficiency, reliability, and overall system performance. At the same time, the performance and interoperability are adversely affected by the slower device components and complex central management systems and operations. To address the problems encountered in various layers of the erasure coded storage system, in this dissertation, we explore the different aspects of storage and design several techniques to improve the reliability, performance, and interoperability. These techniques range from the comprehensive evaluation of erasure codes, application of erasure codes for highly reliable and high-performance SSD system, to the design of new erasure coding and caching schemes for Hadoop Distributed File System, which is one of the central management systems for distributed storage. Detailed evaluation and results are also provided in this dissertation

Global repair bandwidth cost optimization of generalized regenerating codes in clustered distributed storage systems

In clustered distributed storage systems (CDSSs), one of the main design goals is minimizing the transmission cost during the failed storage nodes repairing. Generalized regenerating codes (GRCs) are proposed to balance the intra-cluster repair bandwidth and the inter-cluster repair bandwidth for guaranteeing data availability. The trade-off performance of GRCs illustrates that, it can reduce storage overhead and inter-cluster repair bandwidths simultaneously. However, in practical big data storage scenarios, GRCs cannot give an effective solution to handle the heterogeneity of bandwidth costs among different clusters for node failures recovery. This paper proposes an asymmetric bandwidth allocation strategy (ABAS) of GRCs for the inter-cluster repair in heterogeneous CDSSs. Furthermore, an upper bound of the achievable capacity of ABAS is derived based on the information flow graph (IFG), and the constraints of storage capacity and intra-cluster repair bandwidth are also elaborated. Then, a metric termed global repair bandwidth cost (GRBC), which can be minimized regarding of the inter-cluster repair bandwidths by solving a linear programming problem, is defined. The numerical results demonstrate that, maintaining the same data availability and storage overhead, the proposed ABAS of GRCs can effectively reduce the GRBC compared to the traditional symmetric bandwidth allocation schemes

Reducing the Overhead of Memory Space, Network Communication and Disk I/O for Analytic Frameworks in Big Data Ecosystem

To facilitate big data processing, many distributed analytic frameworks and storage systems such as Apache Hadoop, Apache Hama, Apache Spark and Hadoop Distributed File System (HDFS) have been developed. Currently, many researchers are conducting research to either make them more scalable or enabling them to support more analysis applications. In my PhD study, I conducted three main works in this topic, which are minimizing the communication delay in Apache Hama, minimizing the memory space and computational overhead in HDFS and minimizing the disk I/O overhead for approximation applications in Hadoop ecosystem. Specifically, In Apache Hama, communication delay makes up a large percentage of the overall graph processing time. While most recent research has focused on reducing the number of network messages, we add a runtime communication and computation scheduler to overlap them as much as possible. As a result, communication delay can be mitigated. In HDFS, the block location table and its corresponding maintenance could occupy more than half of the memory space and 30% of processing capacity in master node, which severely limit the scalability and performance of master node. We propose Deister that uses deterministic mathematical calculations to eliminate the huge table for storing the block locations and its corresponding maintenance. My third work proposes to enable both efficient and accurate approximations on arbitrary sub-datasets of a large dataset. Existing offline sampling based approximation systems are not adaptive to dynamic query workloads and online sampling based approximation systems suffer from low I/O efficiency and poor estimation accuracy. Therefore, we develop a distribution aware method called Sapprox. Our idea is to collect the occurrences of a sub-dataset at each logical partition of a dataset (storage distribution) in the distributed system at a very small cost, and make good use of such information to facilitate online sampling

Research on High-performance and Scalable Data Access in Parallel Big Data Computing

To facilitate big data processing, many dedicated data-intensive storage systems such as Google File System(GFS), Hadoop Distributed File System(HDFS) and Quantcast File System(QFS) have been developed. Currently, the Hadoop Distributed File System(HDFS) [20] is the state-of-art and most popular open-source distributed file system for big data processing. It is widely deployed as the bedrock for many big data processing systems/frameworks, such as the script-based pig system, MPI-based parallel programs, graph processing systems and scala/java-based Spark frameworks. These systems/applications employ parallel processes/executors to speed up data processing within scale-out clusters. Job or task schedulers in parallel big data applications such as mpiBLAST and ParaView can maximize the usage of computing resources such as memory and CPU by tracking resource consumption/availability for task assignment. However, since these schedulers do not take the distributed I/O resources and global data distribution into consideration, the data requests from parallel processes/executors in big data processing will unfortunately be served in an imbalanced fashion on the distributed storage servers. These imbalanced access patterns among storage nodes are caused because a). unlike conventional parallel file system using striping policies to evenly distribute data among storage nodes, data-intensive file systems such as HDFS store each data unit, referred to as chunk or block file, with several copies based on a relative random policy, which can result in an uneven data distribution among storage nodes; b). based on the data retrieval policy in HDFS, the more data a storage node contains, the higher the probability that the storage node could be selected to serve the data. Therefore, on the nodes serving multiple chunk files, the data requests from different processes/executors will compete for shared resources such as hard disk head and network bandwidth. Because of this, the makespan of the entire program could be significantly prolonged and the overall I/O performance will degrade. The first part of my dissertation seeks to address aspects of these problems by creating an I/O middleware system and designing matching-based algorithms to optimize data access in parallel big data processing. To address the problem of remote data movement, we develop an I/O middleware system, called SLAM, which allows MPI-based analysis and visualization programs to benefit from locality read, i.e, each MPI process can access its required data from a local or nearby storage node. This can greatly improve the execution performance by reducing the amount of data movement over network. Furthermore, to address the problem of imbalanced data access, we propose a method called Opass, which models the data read requests that are issued by parallel applications to cluster nodes as a graph data structure where edges weights encode the demands of load capacity. We then employ matching-based algorithms to map processes to data to achieve data access in a balanced fashion. The final part of my dissertation focuses on optimizing sub-dataset analyses in parallel big data processing. Our proposed methods can benefit different analysis applications with various computational requirements and the experiments on different cluster testbeds show their applicability and scalability

Flow-Controlled Background Replication for Big Data Jobs

This thesis proposes mechanisms to reduce the cost of data replication. Data replication is an extremely expensive but crucial operation in distributed file systems(DFSs). DFSs lie at the foundation of big data processing systems, therefore, improving them benefits nearly the entire big data ecosystem. Replication secures data against system failures but slows down applications by increasing I/O contention in the system. This thesis proposes flow-controlled background replication as a method to minimize the impact of replication on the performance of applications. The proposed system accelerates jobs, exploits under-utilized storage I/O bandwidth and supports job-based and replica-based bandwidth allocation. Our implementation, called Pfimbi, improved the runtime of data-intensive jobs by up to 30%. Pfimbi accelerated the job runtimes, in a workload based on a Facebook trace, by 15% on average. Pfimbi successfully improves application runtime while obtaining a work span comparable to that of the common synchronous replication scheme