Near-optimal labeling schemes for nearest common ancestors

We consider NCA labeling schemes: given a rooted tree $T$, label the nodes of $T$ with binary strings such that, given the labels of any two nodes, one can determine, by looking only at the labels, the label of their nearest common ancestor. For trees with $n$ nodes we present upper and lower bounds establishing that labels of size $(2\pm \epsilon)\log n$, $\epsilon<1$ are both sufficient and necessary. (All logarithms in this paper are in base 2.) Alstrup, Bille, and Rauhe (SIDMA'05) showed that ancestor and NCA labeling schemes have labels of size $\log n +\Omega(\log \log n)$. Our lower bound increases this to $\log n + \Omega(\log n)$ for NCA labeling schemes. Since Fraigniaud and Korman (STOC'10) established that labels in ancestor labeling schemes have size $\log n +\Theta(\log \log n)$, our new lower bound separates ancestor and NCA labeling schemes. Our upper bound improves the $10 \log n$ upper bound by Alstrup, Gavoille, Kaplan and Rauhe (TOCS'04), and our theoretical result even outperforms some recent experimental studies by Fischer (ESA'09) where variants of the same NCA labeling scheme are shown to all have labels of size approximately $8 \log n$

Link Prediction in Complex Networks: A Survey

Link prediction in complex networks has attracted increasing attention from both physical and computer science communities. The algorithms can be used to extract missing information, identify spurious interactions, evaluate network evolving mechanisms, and so on. This article summaries recent progress about link prediction algorithms, emphasizing on the contributions from physical perspectives and approaches, such as the random-walk-based methods and the maximum likelihood methods. We also introduce three typical applications: reconstruction of networks, evaluation of network evolving mechanism and classification of partially labelled networks. Finally, we introduce some applications and outline future challenges of link prediction algorithms.Comment: 44 pages, 5 figure

Analysis and design of algorithms : double hashing and parallel graph searching

The following is in two parts, corresponding to the two separate topics in the dissertation.Probabilistic Analysis of Double HashingIn [GS78], a deep and elegant analysis shows that double hashing is asymptotically equivalent to the ideal uniform hashing up to a load factor of about 0.319. In this paper we show how a resampling technique can be used to develop a surprisingly simple proof of the result that this equivalence holds for load factors arbitrarily close to 1.Parallel Depth First Search of Planar Directed Acyclic GraphsIn 1988, Kao [Kao88] presented the first NC algorithm for the depth first search of a directed planar graph. Recently, Kao and Klein [KK90] reduced the number of processors required from O(n^4) to linear, but the time bound is O(log^8 n).We present an algorithm for the depth first search of a planar directed acyclic graph with k sources using O(n) processors and O(log k log n) time on a CRCW PRAM model. For planar dags with a single source and a single sink, we present a simple optimal algorithm which gives the depth first search in O(log n) time with O(n/log n) processors on an EREW PRAM. For a single-source multiple-sink planar dag, we have an O(log n) time O(n) processor EREW algorithm. The EREW algorithms assume that the embedding is given. A simplified variant of the depth first search of a multisource planar dag can be used to solve the single source reachability problem for a planar directed acyclic graph in O(log^2 n) time and O(n) processors on an CRCW PRAM. Since an O(log^4 n) algorithm for this problem is used as a subroutine by Kao and Klein in their depth first search for the general planar directed graph, this will lower their time bound by a factor of log^2 n. Our work uses the concept of a planar Euler tour depth first search, a depth first search in which the Euler tour around the tree is planar and crosses no tree edge. This concept may prove to be of use in other parallel algorithms for planar graphs

IST Austria Thesis

This dissertation focuses on algorithmic aspects of program verification, and presents modeling and complexity advances on several problems related to the static analysis of programs, the stateless model checking of concurrent programs, and the competitive analysis of real-time scheduling algorithms. Our contributions can be broadly grouped into five categories. Our first contribution is a set of new algorithms and data structures for the quantitative and data-flow analysis of programs, based on the graph-theoretic notion of treewidth. It has been observed that the control-flow graphs of typical programs have special structure, and are characterized as graphs of small treewidth. We utilize this structural property to provide faster algorithms for the quantitative and data-flow analysis of recursive and concurrent programs. In most cases we make an algebraic treatment of the considered problem, where several interesting analyses, such as the reachability, shortest path, and certain kind of data-flow analysis problems follow as special cases. We exploit the constant-treewidth property to obtain algorithmic improvements for on-demand versions of the problems, and provide data structures with various tradeoffs between the resources spent in the preprocessing and querying phase. We also improve on the algorithmic complexity of quantitative problems outside the algebraic path framework, namely of the minimum mean-payoff, minimum ratio, and minimum initial credit for energy problems. Our second contribution is a set of algorithms for Dyck reachability with applications to data-dependence analysis and alias analysis. In particular, we develop an optimal algorithm for Dyck reachability on bidirected graphs, which are ubiquitous in context-insensitive, field-sensitive points-to analysis. Additionally, we develop an efficient algorithm for context-sensitive data-dependence analysis via Dyck reachability, where the task is to obtain analysis summaries of library code in the presence of callbacks. Our algorithm preprocesses libraries in almost linear time, after which the contribution of the library in the complexity of the client analysis is (i)~linear in the number of call sites and (ii)~only logarithmic in the size of the whole library, as opposed to linear in the size of the whole library. Finally, we prove that Dyck reachability is Boolean Matrix Multiplication-hard in general, and the hardness also holds for graphs of constant treewidth. This hardness result strongly indicates that there exist no combinatorial algorithms for Dyck reachability with truly subcubic complexity. Our third contribution is the formalization and algorithmic treatment of the Quantitative Interprocedural Analysis framework. In this framework, the transitions of a recursive program are annotated as good, bad or neutral, and receive a weight which measures the magnitude of their respective effect. The Quantitative Interprocedural Analysis problem asks to determine whether there exists an infinite run of the program where the long-run ratio of the bad weights over the good weights is above a given threshold. We illustrate how several quantitative problems related to static analysis of recursive programs can be instantiated in this framework, and present some case studies to this direction. Our fourth contribution is a new dynamic partial-order reduction for the stateless model checking of concurrent programs. Traditional approaches rely on the standard Mazurkiewicz equivalence between traces, by means of partitioning the trace space into equivalence classes, and attempting to explore a few representatives from each class. We present a new dynamic partial-order reduction method called the Data-centric Partial Order Reduction (DC-DPOR). Our algorithm is based on a new equivalence between traces, called the observation equivalence. DC-DPOR explores a coarser partitioning of the trace space than any exploration method based on the standard Mazurkiewicz equivalence. Depending on the program, the new partitioning can be even exponentially coarser. Additionally, DC-DPOR spends only polynomial time in each explored class. Our fifth contribution is the use of automata and game-theoretic verification techniques in the competitive analysis and synthesis of real-time scheduling algorithms for firm-deadline tasks. On the analysis side, we leverage automata on infinite words to compute the competitive ratio of real-time schedulers subject to various environmental constraints. On the synthesis side, we introduce a new instance of two-player mean-payoff partial-information games, and show how the synthesis of an optimal real-time scheduler can be reduced to computing winning strategies in this new type of games