4,004 research outputs found
Multiclass Semi-Supervised Learning on Graphs using Ginzburg-Landau Functional Minimization
We present a graph-based variational algorithm for classification of
high-dimensional data, generalizing the binary diffuse interface model to the
case of multiple classes. Motivated by total variation techniques, the method
involves minimizing an energy functional made up of three terms. The first two
terms promote a stepwise continuous classification function with sharp
transitions between classes, while preserving symmetry among the class labels.
The third term is a data fidelity term, allowing us to incorporate prior
information into the model in a semi-supervised framework. The performance of
the algorithm on synthetic data, as well as on the COIL and MNIST benchmark
datasets, is competitive with state-of-the-art graph-based multiclass
segmentation methods.Comment: 16 pages, to appear in Springer's Lecture Notes in Computer Science
volume "Pattern Recognition Applications and Methods 2013", part of series on
Advances in Intelligent and Soft Computin
Classification of protein interaction sentences via gaussian processes
The increase in the availability of protein interaction studies in textual format coupled with the demand for easier access to the key results has lead to a need for text mining solutions. In the text processing pipeline, classification is a key step for extraction of small sections of relevant text. Consequently, for the task of locating protein-protein interaction sentences, we examine the use of a classifier which has rarely been applied to text, the Gaussian processes (GPs). GPs are a non-parametric probabilistic analogue to the more popular support vector machines (SVMs). We find that GPs outperform the SVM and na\"ive Bayes classifiers on binary sentence data, whilst showing equivalent performance on abstract and multiclass sentence corpora. In addition, the lack of the margin parameter, which requires costly tuning, along with the principled multiclass extensions enabled by the probabilistic framework make GPs an appealing alternative worth of further adoption
Distribution matching for transduction
Many transductive inference algorithms assume that distributions over training and test estimates should be related, e.g. by providing a large margin of separation on both sets. We use this idea to design a transduction algorithm which can be used without modification for classification, regression, and structured estimation. At its heart we exploit the fact that for a good learner the distributions over the outputs on training and test sets should match. This is a classical two-sample problem which can be solved efficiently in its most general form by using distance measures in Hilbert Space. It turns out that a number of existing heuristics can be viewed as special cases of our approach.
API design for machine learning software: experiences from the scikit-learn project
Scikit-learn is an increasingly popular machine learning li- brary. Written
in Python, it is designed to be simple and efficient, accessible to
non-experts, and reusable in various contexts. In this paper, we present and
discuss our design choices for the application programming interface (API) of
the project. In particular, we describe the simple and elegant interface shared
by all learning and processing units in the library and then discuss its
advantages in terms of composition and reusability. The paper also comments on
implementation details specific to the Python ecosystem and analyzes obstacles
faced by users and developers of the library
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