Minimum energy configurations of the 2-dimensional HP-model of proteins by self-organizing networks

We use self-organizing maps (SOM) as an efficient tool to find the minimum energy configurations of the 2-dimensional HP-models of proteins. The usage of the SOM for the protein folding problem is similar to that for the Traveling Salesman Problem. The lattice nodes represent the cities whereas the neurons in the network represent the amino acids moving towards the closest cities, subject to the HH interactions. The valid path that maximizes the HH contacts corresponds to the minimum energy configuration of the protein. We report promising results for the cases when the protein completely fills a lattice and discuss the current problems and possible extensions. In all the test sequences up to 36 amino acids, the algorithm was able to find the global minimum and its degeneracies

A Perturbed Self-organizing Multiobjective Evolutionary Algorithm to solve Multiobjective TSP

Travelling Salesman Problem (TSP) is a very important NP-Hard problem getting focused more on these days. Having improvement on TSP, right now consider the multi-objective TSP (MOTSP), broadened occurrence of travelling salesman problem. Since TSP is NP-hard issue MOTSP is additionally a NP-hard issue. There are a lot of algorithms and methods to solve the MOTSP among which Multiobjective evolutionary algorithm based on decomposition is appropriate to solve it nowadays. This work presents a new algorithm which combines the Data Perturbation, Self-Organizing Map (SOM) and MOEA/D to solve the problem of MOTSP, named Perturbed Self-Organizing multiobjective Evolutionary Algorithm (P-SMEA). In P-SMEA Self-Organizing Map (SOM) is used extract neighborhood relationship information and with MOEA/D subproblems are generated and solved simultaneously to obtain the optimal solution. Data Perturbation is applied to avoid the local optima. So by using the P-SMEA, MOTSP can be handled efficiently. The experimental results show that P-SMEA outperforms MOEA/D and SMEA on a set of test instances

An Application of Self-Organizing Map for Multirobot Multigoal Path Planning with Minmax Objective

In this paper, Self-Organizing Map (SOM) for the Multiple Traveling Salesman Problem (MTSP) with minmax objective is applied to the robotic problem of multigoal path planning in the polygonal domain. The main difficulty of such SOM deployment is determination of collision-free paths among obstacles that is required to evaluate the neuron-city distances in the winner selection phase of unsupervised learning. Moreover, a collision-free path is also needed in the adaptation phase, where neurons are adapted towards the presented input signal (city) to the network. Simple approximations of the shortest path are utilized to address this issue and solve the robotic MTSP by SOM. Suitability of the proposed approximations is verified in the context of cooperative inspection, where cities represent sensing locations that guarantee to “see” the whole robots’ workspace. The inspection task formulated as the MTSP-Minmax is solved by the proposed SOM approach and compared with the combinatorial heuristic GENIUS. The results indicate that the proposed approach provides competitive results to GENIUS and support applicability of SOM for robotic multigoal path planning with a group of cooperating mobile robots. The proposed combination of approximate shortest paths with unsupervised learning opens further applications of SOM in the field of robotic planning