The Hierarchic treatment of marine ecological information from spatial networks of benthic platforms

Measuring biodiversity simultaneously in different locations, at different temporal scales, and over wide spatial scales is of strategic importance for the improvement of our understanding of the functioning of marine ecosystems and for the conservation of their biodiversity. Monitoring networks of cabled observatories, along with other docked autonomous systems (e.g., Remotely Operated Vehicles [ROVs], Autonomous Underwater Vehicles [AUVs], and crawlers), are being conceived and established at a spatial scale capable of tracking energy fluxes across benthic and pelagic compartments, as well as across geographic ecotones. At the same time, optoacoustic imaging is sustaining an unprecedented expansion in marine ecological monitoring, enabling the acquisition of new biological and environmental data at an appropriate spatiotemporal scale. At this stage, one of the main problems for an effective application of these technologies is the processing, storage, and treatment of the acquired complex ecological information. Here, we provide a conceptual overview on the technological developments in the multiparametric generation, storage, and automated hierarchic treatment of biological and environmental information required to capture the spatiotemporal complexity of a marine ecosystem. In doing so, we present a pipeline of ecological data acquisition and processing in different steps and prone to automation. We also give an example of population biomass, community richness and biodiversity data computation (as indicators for ecosystem functionality) with an Internet Operated Vehicle (a mobile crawler). Finally, we discuss the software requirements for that automated data processing at the level of cyber-infrastructures with sensor calibration and control, data banking, and ingestion into large data portals.Peer ReviewedPostprint (published version

TRA of DigiMon components

The DigiMon project aims to develop an affordable, flexible, societally embedded and smart monitoring system for industrial scale subsurface CO2 storage. For this purpose, the DigiMon system is to combine various types of measurements in integrated workflows. In this report, we describe the process of conducting the Technology Readiness Assessment (TRA) of various measurement techniques. We report on the identification, description and assessment of these measurement techniques as Critical Technology Elements (CTEs) being part of the DigiMon system

Quantitative Comparison of Benthic Habitat Maps Derived From Multibeam Echosounder Backscatter Data

In the last decade, following the growing concern for the conservation of marine ecosystems, a wide range of approaches has been developed to achieve the identification, classification and mapping of seabed types and of benthic habitats. These approaches, commonly grouped under the denominations of Benthic Habitat Mapping or Acoustic Seabed Classification, exploit the latest scientific and engineering advancements for the exploration of the bottom of the ocean, particularly in underwater acoustics. Among all acoustic seabed-mapping systems available for this purpose, a growing interest has recently developed for Multibeam Echosounders (MBES). This interest is mainly the result of the multiplicity of these systems’ outputs (that is, bathymetry, backscatter mosaic, angular response and water-column data), which allows for multiple approaches to seabed or habitat classification and mapping. While this diversity of mapping approaches and this multiplicity of MBES data products contribute to an increasing quality of the charting of the marine environment, they also unfortunately delay the future standardization of mapping methods, which is required for their effective integration in marine environment management strategies. As a preliminary step towards such standardization, there is a need for generalized efforts of comparison of systems, data products, and mapping approaches, in order to assess the most effective ones given mapping objectives and environment conditions. The main goal of this thesis is to contribute to this effort through the development and implementation of tools and methods for the comparison of categorical seabed or habitat maps, with a specific focus on maps obtained from up-to-date methodologies of classification of MBES backscatter data. This goal is attained through the achievement of specific objectives treated sequentially. First, the need for comparison is justified through a review of the diversity characterizing the fields of Benthic Habitat Mapping and Acoustic Seabed Classification, and of their use of MBES data products. Then, a case study is presented that compare the data products from a Kongsberg EM3000 MBES to the output map of an Acoustic Ground Discrimination Software based on data from a Single-beam Echosounder and to a Sidescan Sonar mosaic, in order to illustrate how map comparison measures could contribute to the comparison of these systems. Next, a number of measures for map-to-map comparison, inspired from the literature in land remote sensing, are presented, along with methodologies for their implementation in comparison of maps described with different legends. The benefit of these measures and methodologies is demonstrated through their application to maps obtained from the acoustic datasets presented previously. Finally, a more typical implementation of these measures is presented as a case study in which the development of two up-to-date classification methodologies of MBES backscatter data is complemented by the quantitative comparison of their output maps. In the process of developing and illustrating the use of methods for the assessment of map-to-map similarity, this thesis also presents methodologies for the processing and classification of backscatter data from MBES. In particular, the potential of the combined use of the spatial and angular information of these data for seabed classification is explored through the development of an original segmentation methodology that sequentially divides and aggregates segments defined from a MBES backscatter mosaic on the basis of their angular response content

Implementing and Innovating Marine Monitoring Approaches for Assessing Marine Environmental Status

Danovaro, Roberto ... et al.-- 25 pages, 9 figures, 2 tablesMarine environmental monitoring has tended to focus on site-specific methods of investigation. These traditional methods have low spatial and temporal resolution and are relatively labor intensive per unit area/time that they cover. To implement the Marine Strategy Framework Directive (MSFD), European Member States are required to improve marine monitoring and design monitoring networks. This can be achieved by developing and testing innovative and cost-effective monitoring systems, as well as indicators of environmental status. Here, we present several recently developed methodologies and technologies to improve marine biodiversity indicators and monitoring methods. The innovative tools are discussed concerning the technologies presently utilized as well as the advantages and disadvantages of their use in routine monitoring. In particular, the present analysis focuses on: (i) molecular approaches, including microarray, Real Time quantitative PCR (qPCR), and metagenetic (metabarcoding) tools; (ii) optical (remote) sensing and acoustic methods; and (iii) in situ monitoring instruments. We also discuss their applications in marine monitoring within the MSFD through the analysis of case studies in order to evaluate their potential utilization in future routine marine monitoring. We show that these recently-developed technologies can present clear advantages in accuracy, efficiency and costThis manuscript is a result of DEVOTES (DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status) project, funded by the European Union under the 7th Framework Programme, “The Ocean of Tomorrow” Theme (grant agreement no. 308392) (http://www.devotes-project.eu). Further financial assistance was provided to VS and ER by the European Union under the ENPI CBC Mediterranean Sea Basin Programme (Sustainability and Tourism in the Mediterranean—S&T Med Strategic Project)Peer Reviewe

Uses of innovative modeling tools within the implementation of the marine strategy framework directive

© 2016 Lynam, Uusitalo, Patrício, Piroddi, Queirós, Teixeira, Rossberg, Sagarminaga, Hyder, Niquil, Möllmann, Wilson, Chust, Galparsoro, Forster, Veríssimo, Tedesco, Revilla and Neville. In Europe and around the world, the approach to management of the marine environment has developed from the management of single issues (e.g., species and/or pressures) toward holistic Ecosystem Based Management (EBM) that includes aims to maintain biological diversity and protect ecosystem functioning. Within the European Union, this approach is implemented through the Marine Strategy Framework Directive (MSFD, 2008/56/EC). Integrated Ecosystem Assessment is required by the Directive in order to assess Good Environmental Status (GES). Ecological modeling has a key role to play within the implementation of the MSFD, as demonstrated here by case studies covering a range of spatial scales and a selection of anthropogenic threats. Modeling studies have a strong role to play in embedding data collected at limited points within a larger spatial and temporal scale, thus enabling assessments of pelagic and seabed habitat. Furthermore, integrative studies using food web and ecosystem models are able to investigate changes in food web functioning and biological diversity in response to changes in the environment and human pressures. Modeling should be used to: support the development and selection of specific indicators; set reference points to assess state and the achievement of GES; inform adaptive monitoring programs and trial management scenarios. The modus operandi proposed shows how ecological modeling could support the decision making process leading to appropriate management measures and inform new policy

Benthic habitat mapping in coastal waters of south–east Australia

The Victorian Marine Mapping Project will improve knowledge on the location, spatial distribution, condition and extent of marine habitats and associated biodiversity in Victorian State waters. This information will guide informed decision making, enable priority setting, and assist in targeted natural resource management planning. This project entails benthic habitat mapping over 500 square kilometers of Victorian State waters using multibeam sonar, towed video and image classification techniques. Information collected includes seafloor topography, seafloor softness and hardness (reflectivity), and information on geology and benthic flora and fauna assemblages collectively comprising habitat. Computerized semi-automated classification techniques are also being developed to provide a cost effective approach to rapid mapping and assessment of coastal habitats.Habitat mapping is important for understanding and communicating the distribution of natural values within the marine environment. The coastal fringe of Victoria encompasses a rich and diverse ecosystem representative of coastal waters of South-east Australia. To date, extensive knowledge of these systems is limited due to the lack of available data. Knowledge of the distribution and extent of habitat is required to target management activities most effectively, and provide the basis to monitor and report on their status in the future.<br /

Fit-for-Purpose Information for Offshore Wind Farming Applications—Part-II: Gap Analysis and Recommendations

Offshore wind energy installations in coastal areas have grown massively over the last decade. This development comes with a large number of technological, environmental, economic, and scientific challenges, which need to be addressed to make the use of offshore wind energy sustainable. One important component in these optimization activities is suitable information from observations and numerical models. The purpose of this study is to analyze the gaps that exist in the present monitoring systems and their respective integration with models. This paper is the second part of two manuscripts and uses results from the first part about the requirements for different application fields. The present solutions to provide measurements for the required information products are described for several European countries with growing offshore wind operations. The gaps are then identified and discussed in different contexts, like technology evolution, trans-European monitoring and modeling initiatives, legal aspects, and cooperation between industry and science. The monitoring gaps are further quantified in terms of missing observed quantities, spatial coverage, accuracy, and continuity. Strategies to fill the gaps are discussed, and respective recommendations are provided. The study shows that there are significant information deficiencies that need to be addressed to ensure the economical and environmentally friendly growth of the offshore wind farm sector. It was also found that many of these gaps are related to insufficient information about connectivities, e.g., concerning the interactions of wind farms from different countries or the coupling between physical and biological processes.publishedVersio

Gas hydrate technology: state of the art and future possibilities for Europe

Interest in natural gas hydrates has been steadily increasing over the last few decades, with the understanding that exploitation of this abundant unconventional source may help meet the ever-increasing energy demand and assist in reduction of CO2 emission (by replacing coal). Unfortunately, conventional technologies for oil and gas exploitation are not fully appropriate for the specific exploitation of gas hydrate. Consequently, the technology chain, from exploration through production to monitoring, needs to be further developed and adapted to the specific properties and conditions associated with gas hydrates, in order to allow for a commercially and environmentally sound extraction of gas from gas hydrate deposits. Various academic groups and companies within the European region have been heavily involved in theoretical and applied research of gas hydrate for more than a decade. To demonstrate this, Fig. 1.1 shows a selection of leading European institutes that are actively involved in gas hydrate research. A significant number of these institutes have been strongly involved in recent worldwide exploitation of gas hydrate, which are shown in Fig. 1.2 and summarized in Table 1.1. Despite the state of knowledge, no field trials have been carried out so far in European waters. MIGRATE (COST action ES1405) aims to pool together expertise of a large number of European research groups and industrial players to advance gas-hydrate related activity with the ultimate goal of preparing the setting for a field production test in European waters. This MIGRATE report presents an overview of current technologies related to gas hydrate exploration (Chapter 2), production (Chapter 3) and monitoring (Chapter 4), with an emphasis on European activity. This requires covering various activities within different disciplines, all of which contribute to the technology development needed for future cost-effective gas production. The report points out future research and work areas (Chapter 5) that would bridge existing knowledge gaps, through multinational collaboration and interdisciplinary approaches