Bioinformatics service reconciliation by heterogeneous schema transformation

This paper focuses on the problem of bioinformatics service reconciliation in a generic and scalable manner so as to enhance interoperability in a highly evolving field. Using XML as a common representation format, but also supporting existing flat-file representation formats, we propose an approach for the scalable semi-automatic reconciliation of services, possibly invoked from within a scientific workflows tool. Service reconciliation may use the AutoMed heterogeneous data integration system as an intermediary service, or may use AutoMed to produce services that mediate between services. We discuss the application of our approach for the reconciliation of services in an example bioinformatics workflow. The main contribution of this research is an architecture for the scalable reconciliation of bioinformatics services

Finite volume schemes for diffusion equations: introduction to and review of modern methods

We present Finite Volume methods for diffusion equations on generic meshes, that received important coverage in the last decade or so. After introducing the main ideas and construction principles of the methods, we review some literature results, focusing on two important properties of schemes (discrete versions of well-known properties of the continuous equation): coercivity and minimum-maximum principles. Coercivity ensures the stability of the method as well as its convergence under assumptions compatible with real-world applications, whereas minimum-maximum principles are crucial in case of strong anisotropy to obtain physically meaningful approximate solutions