Linked Component Analysis from Matrices to High Order Tensors: Applications to Biomedical Data

With the increasing availability of various sensor technologies, we now have access to large amounts of multi-block (also called multi-set, multi-relational, or multi-view) data that need to be jointly analyzed to explore their latent connections. Various component analysis methods have played an increasingly important role for the analysis of such coupled data. In this paper, we first provide a brief review of existing matrix-based (two-way) component analysis methods for the joint analysis of such data with a focus on biomedical applications. Then, we discuss their important extensions and generalization to multi-block multiway (tensor) data. We show how constrained multi-block tensor decomposition methods are able to extract similar or statistically dependent common features that are shared by all blocks, by incorporating the multiway nature of data. Special emphasis is given to the flexible common and individual feature analysis of multi-block data with the aim to simultaneously extract common and individual latent components with desired properties and types of diversity. Illustrative examples are given to demonstrate their effectiveness for biomedical data analysis.Comment: 20 pages, 11 figures, Proceedings of the IEEE, 201

An Iterative Reweighted Method for Tucker Decomposition of Incomplete Multiway Tensors

We consider the problem of low-rank decomposition of incomplete multiway tensors. Since many real-world data lie on an intrinsically low dimensional subspace, tensor low-rank decomposition with missing entries has applications in many data analysis problems such as recommender systems and image inpainting. In this paper, we focus on Tucker decomposition which represents an Nth-order tensor in terms of N factor matrices and a core tensor via multilinear operations. To exploit the underlying multilinear low-rank structure in high-dimensional datasets, we propose a group-based log-sum penalty functional to place structural sparsity over the core tensor, which leads to a compact representation with smallest core tensor. The method for Tucker decomposition is developed by iteratively minimizing a surrogate function that majorizes the original objective function, which results in an iterative reweighted process. In addition, to reduce the computational complexity, an over-relaxed monotone fast iterative shrinkage-thresholding technique is adapted and embedded in the iterative reweighted process. The proposed method is able to determine the model complexity (i.e. multilinear rank) in an automatic way. Simulation results show that the proposed algorithm offers competitive performance compared with other existing algorithms

Tensor Decomposition for Signal Processing and Machine Learning

Tensors or {\em multi-way arrays} are functions of three or more indices $(i,j,k,\cdots)$ -- similar to matrices (two-way arrays), which are functions of two indices $(r,c)$ for (row,column). Tensors have a rich history, stretching over almost a century, and touching upon numerous disciplines; but they have only recently become ubiquitous in signal and data analytics at the confluence of signal processing, statistics, data mining and machine learning. This overview article aims to provide a good starting point for researchers and practitioners interested in learning about and working with tensors. As such, it focuses on fundamentals and motivation (using various application examples), aiming to strike an appropriate balance of breadth {\em and depth} that will enable someone having taken first graduate courses in matrix algebra and probability to get started doing research and/or developing tensor algorithms and software. Some background in applied optimization is useful but not strictly required. The material covered includes tensor rank and rank decomposition; basic tensor factorization models and their relationships and properties (including fairly good coverage of identifiability); broad coverage of algorithms ranging from alternating optimization to stochastic gradient; statistical performance analysis; and applications ranging from source separation to collaborative filtering, mixture and topic modeling, classification, and multilinear subspace learning.Comment: revised version, overview articl

Tensor Decompositions for Signal Processing Applications From Two-way to Multiway Component Analysis

The widespread use of multi-sensor technology and the emergence of big datasets has highlighted the limitations of standard flat-view matrix models and the necessity to move towards more versatile data analysis tools. We show that higher-order tensors (i.e., multiway arrays) enable such a fundamental paradigm shift towards models that are essentially polynomial and whose uniqueness, unlike the matrix methods, is guaranteed under verymild and natural conditions. Benefiting fromthe power ofmultilinear algebra as theirmathematical backbone, data analysis techniques using tensor decompositions are shown to have great flexibility in the choice of constraints that match data properties, and to find more general latent components in the data than matrix-based methods. A comprehensive introduction to tensor decompositions is provided from a signal processing perspective, starting from the algebraic foundations, via basic Canonical Polyadic and Tucker models, through to advanced cause-effect and multi-view data analysis schemes. We show that tensor decompositions enable natural generalizations of some commonly used signal processing paradigms, such as canonical correlation and subspace techniques, signal separation, linear regression, feature extraction and classification. We also cover computational aspects, and point out how ideas from compressed sensing and scientific computing may be used for addressing the otherwise unmanageable storage and manipulation problems associated with big datasets. The concepts are supported by illustrative real world case studies illuminating the benefits of the tensor framework, as efficient and promising tools for modern signal processing, data analysis and machine learning applications; these benefits also extend to vector/matrix data through tensorization. Keywords: ICA, NMF, CPD, Tucker decomposition, HOSVD, tensor networks, Tensor Train

Tensor Networks for Dimensionality Reduction and Large-Scale Optimizations. Part 2 Applications and Future Perspectives

Part 2 of this monograph builds on the introduction to tensor networks and their operations presented in Part 1. It focuses on tensor network models for super-compressed higher-order representation of data/parameters and related cost functions, while providing an outline of their applications in machine learning and data analytics. A particular emphasis is on the tensor train (TT) and Hierarchical Tucker (HT) decompositions, and their physically meaningful interpretations which reflect the scalability of the tensor network approach. Through a graphical approach, we also elucidate how, by virtue of the underlying low-rank tensor approximations and sophisticated contractions of core tensors, tensor networks have the ability to perform distributed computations on otherwise prohibitively large volumes of data/parameters, thereby alleviating or even eliminating the curse of dimensionality. The usefulness of this concept is illustrated over a number of applied areas, including generalized regression and classification (support tensor machines, canonical correlation analysis, higher order partial least squares), generalized eigenvalue decomposition, Riemannian optimization, and in the optimization of deep neural networks. Part 1 and Part 2 of this work can be used either as stand-alone separate texts, or indeed as a conjoint comprehensive review of the exciting field of low-rank tensor networks and tensor decompositions.Comment: 232 page

Tensor B-Spline Numerical Methods for PDEs: a High-Performance Alternative to FEM

Tensor B-spline methods are a high-performance alternative to solve partial differential equations (PDEs). This paper gives an overview on the principles of Tensor B-spline methodology, shows their use and analyzes their performance in application examples, and discusses its merits. Tensors preserve the dimensional structure of a discretized PDE, which makes it possible to develop highly efficient computational solvers. B-splines provide high-quality approximations, lead to a sparse structure of the system operator represented by shift-invariant separable kernels in the domain, and are mesh-free by construction. Further, high-order bases can easily be constructed from B-splines. In order to demonstrate the advantageous numerical performance of tensor B-spline methods, we studied the solution of a large-scale heat-equation problem (consisting of roughly 0.8 billion nodes!) on a heterogeneous workstation consisting of multi-core CPU and GPUs. Our experimental results nicely confirm the excellent numerical approximation properties of tensor B-splines, and their unique combination of high computational efficiency and low memory consumption, thereby showing huge improvements over standard finite-element methods (FEM)

Tensor Analysis and Fusion of Multimodal Brain Images

Current high-throughput data acquisition technologies probe dynamical systems with different imaging modalities, generating massive data sets at different spatial and temporal resolutions posing challenging problems in multimodal data fusion. A case in point is the attempt to parse out the brain structures and networks that underpin human cognitive processes by analysis of different neuroimaging modalities (functional MRI, EEG, NIRS etc.). We emphasize that the multimodal, multi-scale nature of neuroimaging data is well reflected by a multi-way (tensor) structure where the underlying processes can be summarized by a relatively small number of components or "atoms". We introduce Markov-Penrose diagrams - an integration of Bayesian DAG and tensor network notation in order to analyze these models. These diagrams not only clarify matrix and tensor EEG and fMRI time/frequency analysis and inverse problems, but also help understand multimodal fusion via Multiway Partial Least Squares and Coupled Matrix-Tensor Factorization. We show here, for the first time, that Granger causal analysis of brain networks is a tensor regression problem, thus allowing the atomic decomposition of brain networks. Analysis of EEG and fMRI recordings shows the potential of the methods and suggests their use in other scientific domains.Comment: 23 pages, 15 figures, submitted to Proceedings of the IEE

Convolutional Neural Networks with Transformed Input based on Robust Tensor Network Decomposition

Tensor network decomposition, originated from quantum physics to model entangled many-particle quantum systems, turns out to be a promising mathematical technique to efficiently represent and process big data in parsimonious manner. In this study, we show that tensor networks can systematically partition structured data, e.g. color images, for distributed storage and communication in privacy-preserving manner. Leveraging the sea of big data and metadata privacy, empirical results show that neighbouring subtensors with implicit information stored in tensor network formats cannot be identified for data reconstruction. This technique complements the existing encryption and randomization techniques which store explicit data representation at one place and highly susceptible to adversarial attacks such as side-channel attacks and de-anonymization. Furthermore, we propose a theory for adversarial examples that mislead convolutional neural networks to misclassification using subspace analysis based on singular value decomposition (SVD). The theory is extended to analyze higher-order tensors using tensor-train SVD (TT-SVD); it helps to explain the level of susceptibility of different datasets to adversarial attacks, the structural similarity of different adversarial attacks including global and localized attacks, and the efficacy of different adversarial defenses based on input transformation. An efficient and adaptive algorithm based on robust TT-SVD is then developed to detect strong and static adversarial attacks

Spectral Compressed Sensing via CANDECOMP/PARAFAC Decomposition of Incomplete Tensors

We consider the line spectral estimation problem which aims to recover a mixture of complex sinusoids from a small number of randomly observed time domain samples. Compressed sensing methods formulates line spectral estimation as a sparse signal recovery problem by discretizing the continuous frequency parameter space into a finite set of grid points. Discretization, however, inevitably incurs errors and leads to deteriorated estimation performance. In this paper, we propose a new method which leverages recent advances in tensor decomposition. Specifically, we organize the observed data into a structured tensor and cast line spectral estimation as a CANDECOMP/PARAFAC (CP) decomposition problem with missing entries. The uniqueness of the CP decomposition allows the frequency components to be super-resolved with infinite precision. Simulation results show that the proposed method provides a competitive estimate accuracy compared with existing state-of-the-art algorithms

Canonical forms of Order-kk (k=2,3,4k = 2, 3, 4) Symmetric Tensors of Format 3×⋯×33 \times \dots \times 3 Over Prime Fields

We consider symmetric tensors of format: $3 \times 3$ over $\mathbb{F}_p$ for $p = 2, 3, 5$; $3 \times 3 \times 3$ over $\mathbb{F}_p$ for $p = 2, 3$; and $3 \times 3 \times 3 \times 3$ over $\mathbb{F}_p$ for $p = 2, 3$. In each case we compute their equivalence classes under the action of the general linear group $GL_3 (\mathbb{F}_p )$. We use computer algebra to determine the set of tensors of each symmetric rank, then we compute the orbit of the group action. We determine the maximum symmetric rank of these tensors and compare it with the maximum rank.Comment: 14 pages, 6 tables. arXiv admin note: text overlap with arXiv:1209.502