40,145 research outputs found
Information content-based gene ontology semantic similarity approaches: toward a unified framework theory
Several approaches have been proposed for computing term information content (IC) and semantic similarity scores within the gene ontology (GO) directed acyclic graph (DAG). These approaches contributed to improving protein analyses at the functional level. Considering the recent proliferation of these approaches, a unified theory in a well-defined mathematical framework is necessary in order to provide a theoretical basis for validating these approaches. We review the existing IC-based ontological similarity approaches developed in the context of biomedical and bioinformatics fields to propose a general framework and unified description of all these measures. We have conducted an experimental evaluation to assess the impact of IC approaches, different normalization models, and correction factors on the performance of a functional similarity metric. Results reveal that considering only parents or only children of terms when assessing information content or semantic similarity scores negatively impacts the approach under consideration. This study produces a unified framework for current and future GO semantic similarity measures and provides theoretical basics for comparing different approaches. The experimental evaluation of different approaches based on different term information content models paves the way towards a solution to the issue of scoring a term’s specificity in the GO DAG
A Perceptually Based Comparison of Image Similarity Metrics
The assessment of how well one image matches another forms a critical component both of models of human visual processing and of many image analysis systems. Two of the most commonly used norms for quantifying image similarity are L1 and L2, which are specific instances of the Minkowski metric. However, there is often not a principled reason for selecting one norm over the other. One way to address this problem is by examining whether one metric, better than the other, captures the perceptual notion of image similarity. This can be used to derive inferences regarding similarity criteria the human visual system uses, as well as to evaluate and design metrics for use in image-analysis applications. With this goal, we examined perceptual preferences for images retrieved on the basis of the L1 versus the L2 norm. These images were either small fragments without recognizable content, or larger patterns with recognizable content created by vector quantization. In both conditions the participants showed a small but consistent preference for images matched with the L1 metric. These results suggest that, in the domain of natural images of the kind we have used, the L1 metric may better capture human notions of image similarity
Exploiting Deep Features for Remote Sensing Image Retrieval: A Systematic Investigation
Remote sensing (RS) image retrieval is of great significant for geological
information mining. Over the past two decades, a large amount of research on
this task has been carried out, which mainly focuses on the following three
core issues: feature extraction, similarity metric and relevance feedback. Due
to the complexity and multiformity of ground objects in high-resolution remote
sensing (HRRS) images, there is still room for improvement in the current
retrieval approaches. In this paper, we analyze the three core issues of RS
image retrieval and provide a comprehensive review on existing methods.
Furthermore, for the goal to advance the state-of-the-art in HRRS image
retrieval, we focus on the feature extraction issue and delve how to use
powerful deep representations to address this task. We conduct systematic
investigation on evaluating correlative factors that may affect the performance
of deep features. By optimizing each factor, we acquire remarkable retrieval
results on publicly available HRRS datasets. Finally, we explain the
experimental phenomenon in detail and draw conclusions according to our
analysis. Our work can serve as a guiding role for the research of
content-based RS image retrieval
Structure-semantics interplay in complex networks and its effects on the predictability of similarity in texts
There are different ways to define similarity for grouping similar texts into
clusters, as the concept of similarity may depend on the purpose of the task.
For instance, in topic extraction similar texts mean those within the same
semantic field, whereas in author recognition stylistic features should be
considered. In this study, we introduce ways to classify texts employing
concepts of complex networks, which may be able to capture syntactic, semantic
and even pragmatic features. The interplay between the various metrics of the
complex networks is analyzed with three applications, namely identification of
machine translation (MT) systems, evaluation of quality of machine translated
texts and authorship recognition. We shall show that topological features of
the networks representing texts can enhance the ability to identify MT systems
in particular cases. For evaluating the quality of MT texts, on the other hand,
high correlation was obtained with methods capable of capturing the semantics.
This was expected because the golden standards used are themselves based on
word co-occurrence. Notwithstanding, the Katz similarity, which involves
semantic and structure in the comparison of texts, achieved the highest
correlation with the NIST measurement, indicating that in some cases the
combination of both approaches can improve the ability to quantify quality in
MT. In authorship recognition, again the topological features were relevant in
some contexts, though for the books and authors analyzed good results were
obtained with semantic features as well. Because hybrid approaches encompassing
semantic and topological features have not been extensively used, we believe
that the methodology proposed here may be useful to enhance text classification
considerably, as it combines well-established strategies
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