A Data Transformation System for Biological Data Sources

Scientific data of importance to biologists in the Human Genome Project resides not only in conventional databases, but in structured files maintained in a number of different formats (e.g. ASN.1 and ACE) as well a.s sequence analysis packages (e.g. BLAST and FASTA). These formats and packages contain a number of data types not found in conventional databases, such as lists and variants, and may be deeply nested. We present in this paper techniques for querying and transforming such data, and illustrate their use in a prototype system developed in conjunction with the Human Genome Center for Chromosome 22. We also describe optimizations performed by the system, a crucial issue for bulk data

A Rigorous Approach to Relate Enterprise and Computational Viewpoints

Multiviewpoint approaches allow stakeholders to design a system from stakeholder-specific viewpoints. By this, a separation of concerns is achieved, which makes designs more manageable. However, to construct a consistent multiviewpoint design, the relations between viewpoints must be defined precisely, so that the consistency of designs from these viewpoints can be verified. The goal of this paper is to make the consistency rules between (a slightly adapted version of) the RM-ODP enterprise and computational viewpoints more precise and to make checking the consistency between these viewpoints practically applicable. To achieve this goal, we apply a generic framework for relating viewpoints that includes reusable consistency rules. We implemented the consistency rules in a tool to show their applicability

Automatic instantiation of abstract tests on specific configurations for large critical control systems

Computer-based control systems have grown in size, complexity, distribution and criticality. In this paper a methodology is presented to perform an abstract testing of such large control systems in an efficient way: an abstract test is specified directly from system functional requirements and has to be instantiated in more test runs to cover a specific configuration, comprising any number of control entities (sensors, actuators and logic processes). Such a process is usually performed by hand for each installation of the control system, requiring a considerable time effort and being an error prone verification activity. To automate a safe passage from abstract tests, related to the so called generic software application, to any specific installation, an algorithm is provided, starting from a reference architecture and a state-based behavioural model of the control software. The presented approach has been applied to a railway interlocking system, demonstrating its feasibility and effectiveness in several years of testing experience

Enforcing reputation constraints on business process workflows

The problem of trust in determining the flow of execution of business processes has been in the centre of research interst in the last decade as business processes become a de facto model of Internet-based commerce, particularly with the increasing popularity in Cloud computing. One of the main mea-sures of trust is reputation, where the quality of services as provided to their clients can be used as the main factor in calculating service and service provider reputation values. The work presented here contributes to the solving of this problem by defining a model for the calculation of service reputa-tion levels in a BPEL-based business workflow. These levels of reputation are then used to control the execution of the workflow based on service-level agreement constraints provided by the users of the workflow. The main contribution of the paper is to first present a formal meaning for BPEL processes, which is constrained by reputation requirements from the users, and then we demonstrate that these requirements can be enforced using a reference architecture with a case scenario from the domain of distributed map processing. Finally, the paper discusses the possible threats that can be launched on such an architecture

A Survey of Languages for Specifying Dynamics: A Knowledge Engineering Perspective

A number of formal specification languages for knowledge-based systems has been developed. Characteristics for knowledge-based systems are a complex knowledge base and an inference engine which uses this knowledge to solve a given problem. Specification languages for knowledge-based systems have to cover both aspects. They have to provide the means to specify a complex and large amount of knowledge and they have to provide the means to specify the dynamic reasoning behavior of a knowledge-based system. We focus on the second aspect. For this purpose, we survey existing approaches for specifying dynamic behavior in related areas of research. In fact, we have taken approaches for the specification of information systems (Language for Conceptual Modeling and TROLL), approaches for the specification of database updates and logic programming (Transaction Logic and Dynamic Database Logic) and the generic specification framework of abstract state machine

Proceedings of the 3rd Workshop on Domain-Specific Language Design and Implementation (DSLDI 2015)

The goal of the DSLDI workshop is to bring together researchers and practitioners interested in sharing ideas on how DSLs should be designed, implemented, supported by tools, and applied in realistic application contexts. We are both interested in discovering how already known domains such as graph processing or machine learning can be best supported by DSLs, but also in exploring new domains that could be targeted by DSLs. More generally, we are interested in building a community that can drive forward the development of modern DSLs. These informal post-proceedings contain the submitted talk abstracts to the 3rd DSLDI workshop (DSLDI'15), and a summary of the panel discussion on Language Composition