40,627 research outputs found
Ant colony system-based applications to electrical distribution system optimization
Chapter 16, February 201
A Factor Graph Approach to Automated Design of Bayesian Signal Processing Algorithms
The benefits of automating design cycles for Bayesian inference-based
algorithms are becoming increasingly recognized by the machine learning
community. As a result, interest in probabilistic programming frameworks has
much increased over the past few years. This paper explores a specific
probabilistic programming paradigm, namely message passing in Forney-style
factor graphs (FFGs), in the context of automated design of efficient Bayesian
signal processing algorithms. To this end, we developed "ForneyLab"
(https://github.com/biaslab/ForneyLab.jl) as a Julia toolbox for message
passing-based inference in FFGs. We show by example how ForneyLab enables
automatic derivation of Bayesian signal processing algorithms, including
algorithms for parameter estimation and model comparison. Crucially, due to the
modular makeup of the FFG framework, both the model specification and inference
methods are readily extensible in ForneyLab. In order to test this framework,
we compared variational message passing as implemented by ForneyLab with
automatic differentiation variational inference (ADVI) and Monte Carlo methods
as implemented by state-of-the-art tools "Edward" and "Stan". In terms of
performance, extensibility and stability issues, ForneyLab appears to enjoy an
edge relative to its competitors for automated inference in state-space models.Comment: Accepted for publication in the International Journal of Approximate
Reasonin
Application of new probabilistic graphical models in the genetic regulatory networks studies
This paper introduces two new probabilistic graphical models for
reconstruction of genetic regulatory networks using DNA microarray data. One is
an Independence Graph (IG) model with either a forward or a backward search
algorithm and the other one is a Gaussian Network (GN) model with a novel
greedy search method. The performances of both models were evaluated on four
MAPK pathways in yeast and three simulated data sets. Generally, an IG model
provides a sparse graph but a GN model produces a dense graph where more
information about gene-gene interactions is preserved. Additionally, we found
two key limitations in the prediction of genetic regulatory networks using DNA
microarray data, the first is the sufficiency of sample size and the second is
the complexity of network structures may not be captured without additional
data at the protein level. Those limitations are present in all prediction
methods which used only DNA microarray data.Comment: 38 pages, 3 figure
Unsupervised Feature Selection with Adaptive Structure Learning
The problem of feature selection has raised considerable interests in the
past decade. Traditional unsupervised methods select the features which can
faithfully preserve the intrinsic structures of data, where the intrinsic
structures are estimated using all the input features of data. However, the
estimated intrinsic structures are unreliable/inaccurate when the redundant and
noisy features are not removed. Therefore, we face a dilemma here: one need the
true structures of data to identify the informative features, and one need the
informative features to accurately estimate the true structures of data. To
address this, we propose a unified learning framework which performs structure
learning and feature selection simultaneously. The structures are adaptively
learned from the results of feature selection, and the informative features are
reselected to preserve the refined structures of data. By leveraging the
interactions between these two essential tasks, we are able to capture accurate
structures and select more informative features. Experimental results on many
benchmark data sets demonstrate that the proposed method outperforms many state
of the art unsupervised feature selection methods
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