Declarative theorem proving for operational semantics

iAbstract The aim of this Masters Thesis is to propose to SYSteam Nät AB, a local Internet Service Provider (ISP) in Uppsala, Sweden, how to implement IP telephony in their existing IT-infrastructure as a service to their customers. Thus the perspective of the thesis will be that of a local Internet Service Provider. Three general areas are covered in the thesis: Market and Business Model, Technology, and Economics. Important issues for SYSteam Nät AB as an established local broadband Internet Service Provider are to both retain present customers and to attract new customers. Some believe that offering value added services such as IP telephony could do this. Implementation of IP telephony can be done in different ways to fulfil SYSteam Nät’s requirements. The analysis leads to a proposal of how SYSteam Nät could implement IP telephony. This involves many multi-faceted business, technical, and financial issues; each aspect is examined in this thesis. ii Sammanfattnin

Exploring novel designs of NLP solvers: Architecture and Implementation of WORHP

Mathematical Optimization in general and Nonlinear Programming in particular, are applied by many scientific disciplines, such as the automotive sector, the aerospace industry, or the space agencies. With some established NLP solvers having been available for decades, and with the mathematical community being rather conservative in this respect, many of their programming standards are severely outdated. It is safe to assume that such usability shortcomings impede the wider use of NLP methods; a representative example is the use of static workspaces by legacy FORTRAN codes. This dissertation gives an account of the construction of the European NLP solver WORHP by using and combining software standards and techniques that have not previously been applied to mathematical software to this extent. Examples include automatic code generation, a consistent reverse communication architecture and the elimination of static workspaces. The result is a novel, industrial-grade NLP solver that overcomes many technical weaknesses of established NLP solvers and other mathematical software

The ciao prolog system

Ciao is a public domain, next generation multi-paradigm programming environment with a unique set of features: Ciao offers a complete Prolog system, supporting ISO-Prolog, but its novel modular design allows both restricting and extending the language. As a result, it allows working with fully declarative subsets of Prolog and also to extend these subsets (or ISO-Prolog) both syntactically and semantically. Most importantly, these restrictions and extensions can be activated separately on each program module so that several extensions can coexist in the same application for different modules. Ciao also supports (through such extensions) programming with functions, higher-order (with predicate abstractions), constraints, and objects, as well as feature terms (records), persistence, several control rules (breadth-first search, iterative deepening, ...), concurrency (threads/engines), a good base for distributed execution (agents), and parallel execution. Libraries also support WWW programming, sockets, external interfaces (C, Java, TclTk, relational databases, etc.), etc. Ciao offers support for programming in the large with a robust module/object system, module-based separate/incremental compilation (automatically -no need for makefiles), an assertion language for declaring (optional) program properties (including types and modes, but also determinacy, non-failure, cost, etc.), automatic static inference and static/dynamic checking of such assertions, etc. Ciao also offers support for programming in the small producing small executables (including only those builtins used by the program) and support for writing scripts in Prolog. The Ciao programming environment includes a classical top-level and a rich emacs interface with an embeddable source-level debugger and a number of execution visualization tools. The Ciao compiler (which can be run outside the top level shell) generates several forms of architecture-independent and stand-alone executables, which run with speed, efficiency and executable size which are very competive with other commercial and academic Prolog/CLP systems. Library modules can be compiled into compact bytecode or C source files, and linked statically, dynamically, or autoloaded. The novel modular design of Ciao enables, in addition to modular program development, effective global program analysis and static debugging and optimization via source to source program transformation. These tasks are performed by the Ciao preprocessor ( ciaopp, distributed separately). The Ciao programming environment also includes lpdoc, an automatic documentation generator for LP/CLP programs. It processes Prolog files adorned with (Ciao) assertions and machine-readable comments and generates manuals in many formats including postscript, pdf, texinfo, info, HTML, man, etc. , as well as on-line help, ascii README files, entries for indices of manuals (info, WWW, ...), and maintains WWW distribution sites

The ciao system

Abstract is not available

The ciao system

Abstract is not available

Performance Improvement of Multithreaded Java Applications Execution on Multiprocessor Systems

El disseny del llenguatge Java, que inclou aspectes importants com són la seva portabilitat i neutralitat envers l'arquitectura, les seves capacitats multithreading, la seva familiaritat (degut a la seva semblança amb C/C++), la seva robustesa, les seves capacitats en seguretat i la seva naturalesa distribuïda, fan que sigui un llenguatge potencialment interessant per ser utilitzat en entorns paral·lels com són els entorns de computació d'altes prestacions (HPC), on les aplicacions poden treure profit del suport que ofereix Java a l'execució multithreaded per realitzar càlculs en paral·lel, o en entorns e-business, on els servidors Java multithreaded (que segueixen l'especificació J2EE) poden treure profit de les capacitats multithreading de Java per atendre de manera concurrent un gran nombre de peticions.No obstant, l'ús de Java per la programació paral·lela ha d'enfrontar-se a una sèrie de problemes que fàcilment poden neutralitzar el guany obtingut amb l'execució en paral·lel. El primer problema és el gran overhead provocat pel suport de threads de la JVM quan s'utilitzen threads per executar feina de gra fi, quan es crea un gran nombre de threads per suportar l'execució d'una aplicació o quan els threads interaccionen estretament mitjançant mecanismes de sincronització. El segon problema és la degradació en el rendiment produïda quan aquestes aplicacions multithreaded s'executen en sistemes paral·lels multiprogramats. La principal causa d'aquest problemes és la manca de comunicació entre l'entorn d'execució i les aplicacions, la qual pot induir a les aplicacions a fer un ús descoordinat dels recursos disponibles.Aquesta tesi contribueix amb la definició d'un entorn per analitzar i comprendre el comportament de les aplicacions Java multithreaded. La contribució principal d'aquest entorn és que la informació de tots els nivells involucrats en l'execució (aplicació, servidor d'aplicacions, JVM i sistema operatiu) està correlada. Aquest fet és molt important per entendre com aquest tipus d'aplicacions es comporten quan s'executen en entorns que inclouen servidors i màquines virtuals, donat que l'origen dels problemes de rendiment es pot trobar en qualsevol d'aquests nivells o en la seva interacció.Addicionalment, i basat en el coneixement adquirit mitjançant l'entorn d'anàlisis proposat, aquesta tesi contribueix amb mecanismes i polítiques de planificació orientats cap a l'execució eficient d'aplicacions Java multithreaded en sistemes multiprocessador considerant les interaccions i la coordinació dels mecanismes i les polítiques de planificació en els diferents nivells involucrats en l'execució. La idea bàsica consisteix en permetre la cooperació entre les aplicacions i l'entorn d'execució en la gestió de recursos establint una comunicació bi-direccional entre les aplicacions i el sistema. Per una banda, les aplicacions demanen a l'entorn d'execució la quantitat de recursos que necessiten. Per altra banda, l'entorn d'execució pot ser inquirit en qualsevol moment per les aplicacions ser informades sobre la seva assignació de recursos. Aquesta tesi proposa que les aplicacions utilitzin la informació proporcionada per l'entorn d'execució per adaptar el seu comportament a la quantitat de recursos que tenen assignats (aplicacions auto-adaptables). Aquesta adaptació s'assoleix en aquesta tesi per entorns HPC per mitjà de la mal·leabilitat de les aplicacions, i per entorns e-business amb una proposta de control de congestió que fa control d'admissió basat en la diferenciació de connexions SSL per prevenir la degradació del rendiment i mantenir la Qualitat de Servei (QoS).Els resultats de l'avaluació demostren que subministrar recursos de manera dinàmica a les aplicacions auto-adaptables en funció de la seva demanda millora el rendiment de les aplicacions Java multithreaded tant en entorns HPC com en entorns e-business. Mentre disposar d'aplicacions auto-adaptables evita la degradació del rendiment, el subministrament dinàmic de recursos permet satisfer els requeriments de les aplicacions en funció de la seva demanda i adaptar-se a la variabilitat de les seves necessitats de recursos. D'aquesta manera s'aconsegueix una millor utilització dels recursos donat que els recursos que no utilitza una aplicació determinada poden ser distribuïts entre les altres aplicacions.The design of the Java language, which includes important aspects such as its portability and architecture neutrality, its multithreading facilities, its familiarity (due to its resemblance with C/C++), its robustness, its security capabilities and its distributed nature, makes it a potentially interesting language to be used in parallel environments such as high performance computing (HPC) environments, where applications can benefit from the Java multithreading support for performing parallel calculations, or e-business environments, where multithreaded Java application servers (i.e. following the J2EE specification) can take profit of Java multithreading facilities to handle concurrently a large number of requests.However, the use of Java for parallel programming has to face a number of problems that can easily offset the gain due to parallel execution. The first problem is the large overhead incurred by the threading support available in the JVM when threads are used to execute fine-grained work, when a large number of threads are created to support the execution of the application or when threads closely interact through synchronization mechanisms. The second problem is the performance degradation occurred when these multithreaded applications are executed in multiprogrammed parallel systems. The main issue that causes these problems is the lack of communication between the execution environment and the applications, which can cause these applications to make an uncoordinated use of the available resources.This thesis contributes with the definition of an environment to analyze and understand the behavior of multithreaded Java applications. The main contribution of this environment is that all levels in the execution (application, application server, JVM and operating system) are correlated. This is very important to understand how this kind of applications behaves when executed on environments that include servers and virtual machines, because the origin of performance problems can reside in any of these levels or in their interaction.In addition, and based on the understanding gathered using the proposed analysis environment, this thesis contributes with scheduling mechanisms and policies oriented towards the efficient execution of multithreaded Java applications on multiprocessor systems considering the interactions and coordination between scheduling mechanisms and policies at the different levels involved in the execution. The basis idea consists of allowing the cooperation between the applications and the execution environment in the resource management by establishing a bi-directional communication path between the applications and the underlying system. On one side, the applications request to the execution environment the amount of resources they need. On the other side, the execution environment can be requested at any time by the applications to inform them about their resource assignments. This thesis proposes that applications use the information provided by the execution environment to adapt their behavior to the amount of resources allocated to them (self-adaptive applications). This adaptation is accomplished in this thesis for HPC environments through the malleability of the applications, and for e-business environments with an overload control approach that performs admission control based on SSL connections differentiation for preventing throughput degradation and maintaining Quality of Service (QoS).The evaluation results demonstrate that providing resources dynamically to self-adaptive applications on demand improves the performance of multithreaded Java applications as in HPC environments as in e-business environments. While having self-adaptive applications avoids performance degradation, dynamic provision of resources allows meeting the requirements of the applications on demand and adapting to their changing resource needs. In this way, better resource utilization is achieved because the resources not used by some application may be distributed among other applications

Adaptivity: Linguistic Mechanisms and Static Analysis Techniques

Adaptive systems modify their behaviour in order to run always and everywhere. Their structure is therefore subject to continuous changes, which however could compromise the correct behaviour of applications and break the guarantees on their non-functional requirements. Effective mechanisms are thus required to adapt software to the new added functionalities and to changes of the operational environment, namely the context in which applications are plugged in. These mechanisms must also maintain the applications properties after adaptation occurs. Consequently, a shift in programming technologies and methodologies is needed to manage adaptivity successfully. Since every system, be it adaptive or not, has to be programmed, programming languages need to natively support adaptivity. Furthermore, having adaptivity as a linguistic construct enables us to design and to develop more adequate verification tools that can help to prevent system failures due to erroneous or unexpected changes. This thesis addresses adaptivity, adopting an approach firmly based on programming languages and formal methods. In particular, we have two main concerns. The first one consists of introducing appropriate linguistic primitives to describe the context and to express adaptation. The second one is about the design of verification tools, based on static analysis techniques, in order to ensure that the software maintains its consistency after adaptation

Chapter 34 - Biocompatibility of nanocellulose: Emerging biomedical applications

Nanocellulose already proved to be a highly relevant material for biomedical applications, ensued by its outstanding mechanical properties and, more importantly, its biocompatibility. Nevertheless, despite their previous intensive research, a notable number of emerging applications are still being developed. Interestingly, this drive is not solely based on the nanocellulose features, but also heavily dependent on sustainability. The three core nanocelluloses encompass cellulose nanocrystals (CNCs), cellulose nanofibrils (CNFs), and bacterial nanocellulose (BNC). All these different types of nanocellulose display highly interesting biomedical properties per se, after modification and when used in composite formulations. Novel applications that use nanocellulose includewell-known areas, namely, wound dressings, implants, indwelling medical devices, scaffolds, and novel printed scaffolds. Their cytotoxicity and biocompatibility using recent methodologies are thoroughly analyzed to reinforce their near future applicability. By analyzing the pristine core nanocellulose, none display cytotoxicity. However, CNF has the highest potential to fail long-term biocompatibility since it tends to trigger inflammation. On the other hand, neverdried BNC displays a remarkable biocompatibility. Despite this, all nanocelluloses clearly represent a flag bearer of future superior biomaterials, being elite materials in the urgent replacement of our petrochemical dependence

HIGH FIDELITY MEASUREMENT OF BIOELECTRICAL SIGNALS

Previous research regarding the acquisition and electrical characterization of bio- electrical signals of both noninvasive “oriundis in vivo”, generally associated with elec- tromyography (EMG), electrocardiography (EKG), or electroencephalography (EEG), and active “oriundis ex vivo et vitro” material characterization, generally associated with bioimpedance spectroscopy (BIS); while successfully providing beneficial results, was ul- timately plagued with a variety of intrinsic electrical distortions [1] [2]. Conversely, the frequent manifestation of such distortions resulted in an investigation into the nature of their occurrence, which subsequently resulted in my research into the nature of such dis- tortions, the conditions in which they occur, useful techniques to model and minimize their impact, and the underlying methodology needed to obtain the highest fidelity possi- ble when acquiring such measurements. Furthermore, the techniques developed are then applied to both noninvasively obtained “oriundis in vivo” and active “oriundis ex vivo et vitro” applied bioelectrical signals, and the compensated measurements are compared with the uncompensated measurements obtained within the previously mentioned research