Analysis and application of Fourier-Motzkin variable elimination to program optimization : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Computer Science at Massey University, Albany, New Zealand

This thesis examines four of the most influential dependence analysis techniques in use by optimizing compilers: Fourier-Motzkin Variable Elimination, the Banerjee Bounds Test, the Omega Test, and the I-Test. Although the performance and effectiveness of these tests have previously been documented empirically, no in-depth analysis of how these techniques are related from a purely analytical perspective has been done. The analysis given here clarifies important aspects of the empirical results that were noted but never fully explained. A tighter bound on the performance of one of the Omega Test algorithms than was known previously is proved and a link is shown between the integer refinement technique used in the Omega Test and the well-known Frobenius Coin Problem. The application of a Fourier-Motzkin based algorithm to the elimination of redundant bound checks in Java bytecode is described. A system which incorporated this technique improved performance on the Java Grande Forum Benchmark Suite by up to 10 percent

Estimation under group actions: recovering orbits from invariants

Motivated by geometric problems in signal processing, computer vision, and structural biology, we study a class of orbit recovery problems where we observe very noisy copies of an unknown signal, each acted upon by a random element of some group (such as Z/p or SO(3)). The goal is to recover the orbit of the signal under the group action in the high-noise regime. This generalizes problems of interest such as multi-reference alignment (MRA) and the reconstruction problem in cryo-electron microscopy (cryo-EM). We obtain matching lower and upper bounds on the sample complexity of these problems in high generality, showing that the statistical difficulty is intricately determined by the invariant theory of the underlying symmetry group. In particular, we determine that for cryo-EM with noise variance $\sigma^2$ and uniform viewing directions, the number of samples required scales as $\sigma^6$. We match this bound with a novel algorithm for ab initio reconstruction in cryo-EM, based on invariant features of degree at most 3. We further discuss how to recover multiple molecular structures from heterogeneous cryo-EM samples.Comment: 54 pages. This version contains a number of new result

Some advances in the polyhedral model

Department Head: L. Darrell Whitley.2010 Summer.Includes bibliographical references.The polyhedral model is a mathematical formalism and a framework for the analysis and transformation of regular computations. It provides a unified approach to the optimization of computations from different application domains. It is now gaining wide use in optimizing compilers and automatic parallelization. In its purest form, it is based on a declarative model where computations are specified as equations over domains defined by "polyhedral sets". This dissertation presents two results. First is an analysis and optimization technique that enables us to simplify---reduce the asymptotic complexity---of such equations. The second is an extension of the model to richer domains called Ƶ-Polyhedra. Many equational specifications in the polyhedral model have reductions---application of an associative and commutative operator to collections of values to produce a collection of answers. Moreover, expressions in such equations may also exhibit reuse where intermediate values that are computed or used at different index points are identical. We develop various compiler transformations to automatically exploit this reuse and simplify the computational complexity of the specification. In general, there is an infinite set of applicable simplification transformations. Unfortunately, different choices may result in equivalent specifications with different asymptotic complexity. We present an algorithm for the optimal application of simplification transformations resulting in a final specification with minimum complexity. This dissertation also presents the Ƶ-Polyhedral model, an extension to the polyhedral model to more general sets, thereby providing a transformation framework for a larger set of regular computations. For this, we present a novel representation and interpretation of Ƶ-Polyhedra and prove a number of properties of the family of unions of Ƶ-Polyhedra that are required to extend the polyhedral model. Finally, we present value based dependence analysis and scheduling analysis for specifications in the Ƶ-Polyhedral model. These are direct extensions of the corresponding analyses of specifications in the polyhedral model. One of the benefits of our results in the Ƶ-Polyhedral model is that our abstraction allows the reuse of previously developed tools in the polyhedral model with straightforward pre- and post-processing

Nonlinear Integer Programming

Research efforts of the past fifty years have led to a development of linear integer programming as a mature discipline of mathematical optimization. Such a level of maturity has not been reached when one considers nonlinear systems subject to integrality requirements for the variables. This chapter is dedicated to this topic. The primary goal is a study of a simple version of general nonlinear integer problems, where all constraints are still linear. Our focus is on the computational complexity of the problem, which varies significantly with the type of nonlinear objective function in combination with the underlying combinatorial structure. Numerous boundary cases of complexity emerge, which sometimes surprisingly lead even to polynomial time algorithms. We also cover recent successful approaches for more general classes of problems. Though no positive theoretical efficiency results are available, nor are they likely to ever be available, these seem to be the currently most successful and interesting approaches for solving practical problems. It is our belief that the study of algorithms motivated by theoretical considerations and those motivated by our desire to solve practical instances should and do inform one another. So it is with this viewpoint that we present the subject, and it is in this direction that we hope to spark further research.Comment: 57 pages. To appear in: M. J\"unger, T. Liebling, D. Naddef, G. Nemhauser, W. Pulleyblank, G. Reinelt, G. Rinaldi, and L. Wolsey (eds.), 50 Years of Integer Programming 1958--2008: The Early Years and State-of-the-Art Surveys, Springer-Verlag, 2009, ISBN 354068274

UQTools: The Uncertainty Quantification Toolbox - Introduction and Tutorial

UQTools is the short name for the Uncertainty Quantification Toolbox, a software package designed to efficiently quantify the impact of parametric uncertainty on engineering systems. UQTools is a MATLAB-based software package and was designed to be discipline independent, employing very generic representations of the system models and uncertainty. Specifically, UQTools accepts linear and nonlinear system models and permits arbitrary functional dependencies between the system s measures of interest and the probabilistic or non-probabilistic parametric uncertainty. One of the most significant features incorporated into UQTools is the theoretical development centered on homothetic deformations and their application to set bounding and approximating failure probabilities. Beyond the set bounding technique, UQTools provides a wide range of probabilistic and uncertainty-based tools to solve key problems in science and engineering

Tools and Algorithms for the Construction and Analysis of Systems

This open access two-volume set constitutes the proceedings of the 27th International Conference on Tools and Algorithms for the Construction and Analysis of Systems, TACAS 2021, which was held during March 27 – April 1, 2021, as part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2021. The conference was planned to take place in Luxembourg and changed to an online format due to the COVID-19 pandemic. The total of 41 full papers presented in the proceedings was carefully reviewed and selected from 141 submissions. The volume also contains 7 tool papers; 6 Tool Demo papers, 9 SV-Comp Competition Papers. The papers are organized in topical sections as follows: Part I: Game Theory; SMT Verification; Probabilities; Timed Systems; Neural Networks; Analysis of Network Communication. Part II: Verification Techniques (not SMT); Case Studies; Proof Generation/Validation; Tool Papers; Tool Demo Papers; SV-Comp Tool Competition Papers

Improvement of ECM Techniques through Implementation of a Genetic Algorithm

This research effective effort develops the necessary interfaces between the radar signal processing components and an optimization routine, such as genetic algorithms, to develop Electronic Countermeasure (ECM) waveforms under a Hardware-in-the-Loop (HILS) architecture. The various ECM waveforms are stored in an ECM library, where an operator selects the desired function to use against a particular system. This optimization works with modular components, compared to previous research that embedded a genetic algorithm into the Range Gate Pull-off (RGPO) waveform optimization loop, which can be interchanged based upon the operator\u27s desired hardware/ software testing setup. The ECM library\u27s first entries contain the RGPO and Velocity Gate Pull-off (VGPO) signals, developed mathematically for multiple polynomial profiles representing realistic moving false targets. The Lab-Volt™ training system and jammer pod provided a validation medium for the developed RGPO and VGPO waveforms. These waveforms were optimized using a Simulink model of the Lab-Volt™ radar system and the MATLAB® Genetic Algorithm (GA) and Direct Search toolbox, contained in Version 7.4 (R2007a), using a defined parameter set, specified for the RGPO waveform. Integration of MATLAB® code with Simulink models provides the necessary interfaces to later transition from software radar models to actual system hardware. Results from GA optimization illuminate the necessity to specifically define the necessary constrains, both linear and nonlinear, imposed upon the environmental conditions. Given defined constraints relative to the Lab-Volt™ training system, the HILS architecture produced multiple constant velocity range profiles with walk-off ranges and maximum velocities similar to the Lab-Volt™ Jammer Pod