Load Balancing and Job Migration Algorithms for Autonomic Grid Environment

Resource management and load balancing are the main areas of concern in a distributed, heterogeneous and dynamic environment like Grid. Load balancing may further cause Job migration or in some cases resubmission of Job. In this paper a number of job migration algorithms have been surveyed and studied which have resulted because of the Load balancing problem. A comparative analysis of these algorithms has also been presented which summarizes the utility and applicability of different algorithms in different environment and circumstances

Infrastructural Security for Virtualized Grid Computing

The goal of the grid computing paradigm is to make computer power as easy to access as an electrical power grid. Unlike the power grid, the computer grid uses remote resources located at a service provider. Malicious users can abuse the provided resources, which not only affects their own systems but also those of the provider and others. Resources are utilized in an environment where sensitive programs and data from competitors are processed on shared resources, creating again the potential for misuse. This is one of the main security issues, since in a business environment competitors distrust each other, and the fear of industrial espionage is always present. Currently, human trust is the strategy used to deal with these threats. The relationship between grid users and resource providers ranges from highly trusted to highly untrusted. This wide trust relationship occurs because grid computing itself changed from a research topic with few users to a widely deployed product that included early commercial adoption. The traditional open research communities have very low security requirements, while in contrast, business customers often operate on sensitive data that represents intellectual property; thus, their security demands are very high. In traditional grid computing, most users share the same resources concurrently. Consequently, information regarding other users and their jobs can usually be acquired quite easily. This includes, for example, that a user can see which processes are running on another user´s system. For business users, this is unacceptable since even the meta-data of their jobs is classified. As a consequence, most commercial customers are not convinced that their intellectual property in the form of software and data is protected in the grid. This thesis proposes a novel infrastructural security solution that advances the concept of virtualized grid computing. The work started back in 2007 and led to the development of the XGE, a virtual grid management software. The XGE itself uses operating system virtualization to provide a virtualized landscape. Users’ jobs are no longer executed in a shared manner; they are executed within special sandboxed environments. To satisfy the requirements of a traditional grid setup, the solution can be coupled with an installed scheduler and grid middleware on the grid head node. To protect the prominent grid head node, a novel dual-laned demilitarized zone is introduced to make attacks more difficult. In a traditional grid setup, the head node and the computing nodes are installed in the same network, so a successful attack could also endanger the user´s software and data. While the zone complicates attacks, it is, as all security solutions, not a perfect solution. Therefore, a network intrusion detection system is enhanced with grid specific signatures. A novel software called Fence is introduced that supports end-to-end encryption, which means that all data remains encrypted until it reaches its final destination. It transfers data securely between the user´s computer, the head node and the nodes within the shielded, internal network. A lightweight kernel rootkit detection system assures that only trusted kernel modules can be loaded. It is no longer possible to load untrusted modules such as kernel rootkits. Furthermore, a malware scanner for virtualized grids scans for signs of malware in all running virtual machines. Using virtual machine introspection, that scanner remains invisible for most types of malware and has full access to all system calls on the monitored system. To speed up detection, the load is distributed to multiple detection engines simultaneously. To enable multi-site service-oriented grid applications, the novel concept of public virtual nodes is presented. This is a virtualized grid node with a public IP address shielded by a set of dynamic firewalls. It is possible to create a set of connected, public nodes, either present on one or more remote grid sites. A special web service allows users to modify their own rule set in both directions and in a controlled manner. The main contribution of this thesis is the presentation of solutions that convey the security of grid computing infrastructures. This includes the XGE, a software that transforms a traditional grid into a virtualized grid. Design and implementation details including experimental evaluations are given for all approaches. Nearly all parts of the software are available as open source software. A summary of the contributions and an outlook to future work conclude this thesis

Holistic Performance Analysis and Optimization of Unified Virtual Memory

The programming difficulty of creating GPU-accelerated high performance computing (HPC) codes has been greatly reduced by the advent of Unified Memory technologies that abstract the management of physical memory away from the developer. However, these systems incur substantial overhead that paradoxically grows for codes where these technologies are most useful. While these technologies are increasingly adopted for use in modern HPC frameworks and applications, the performance cost reduces the efficiency of these systems and turns away some developers from adoption entirely. These systems are naturally difficult to optimize due to the large number of interconnected hardware and software components that must be untangled to perform thorough analysis. In this thesis, we take the first deep dive into a functional implementation of a Unified Memory system, NVIDIA UVM, to evaluate the performance and characteristics of these systems. We show specific hardware and software interactions that cause serialization between host and devices. We further provide a quantitative evaluation of fault handling for various applications under different scenarios, including prefetching and oversubscription. Through lower-level analysis, we find that the driver workload is dependent on the interactions among application access patterns, GPU hardware constraints, and Host OS components. These findings indicate that the cost of host OS components is significant and present across UM implementations. We also provide a proof-of-concept asynchronous approach to memory management in UVM that allows for reduced system overhead and improved application performance. This study provides constructive insight into future implementations and systems, such as Heterogeneous Memory Management

Improving Performance and Energy Efficiency of Heterogeneous Systems with rCUDA

Tesis por compendio[ES] En la última década la utilización de la GPGPU (General Purpose computing in Graphics Processing Units; Computación de Propósito General en Unidades de Procesamiento Gráfico) se ha vuelto tremendamente popular en los centros de datos de todo el mundo. Las GPUs (Graphics Processing Units; Unidades de Procesamiento Gráfico) se han establecido como elementos aceleradores de cómputo que son usados junto a las CPUs formando sistemas heterogéneos. La naturaleza masivamente paralela de las GPUs, destinadas tradicionalmente al cómputo de gráficos, permite realizar operaciones numéricas con matrices de datos a gran velocidad debido al gran número de núcleos que integran y al gran ancho de banda de acceso a memoria que poseen. En consecuencia, aplicaciones de todo tipo de campos, tales como química, física, ingeniería, inteligencia artificial, ciencia de materiales, etc. que presentan este tipo de patrones de cómputo se ven beneficiadas, reduciendo drásticamente su tiempo de ejecución. En general, el uso de la aceleración del cómputo en GPUs ha significado un paso adelante y una revolución. Sin embargo, no está exento de problemas, tales como problemas de eficiencia energética, baja utilización de las GPUs, altos costes de adquisición y mantenimiento, etc. En esta tesis pretendemos analizar las principales carencias que presentan estos sistemas heterogéneos y proponer soluciones basadas en el uso de la virtualización remota de GPUs. Para ello hemos utilizado la herramienta rCUDA, desarrollada en la Universitat Politècnica de València, ya que multitud de publicaciones la avalan como el framework de virtualización remota de GPUs más avanzado de la actualidad. Los resutados obtenidos en esta tesis muestran que el uso de rCUDA en entornos de Cloud Computing incrementa el grado de libertad del sistema, ya que permite crear instancias virtuales de las GPUs físicas totalmente a medida de las necesidades de cada una de las máquinas virtuales. En entornos HPC (High Performance Computing; Computación de Altas Prestaciones), rCUDA también proporciona un mayor grado de flexibilidad de uso de las GPUs de todo el clúster de cómputo, ya que permite desacoplar totalmente la parte CPU de la parte GPU de las aplicaciones. Además, las GPUs pueden estar en cualquier nodo del clúster, independientemente del nodo en el que se está ejecutando la parte CPU de la aplicación. En general, tanto para Cloud Computing como en el caso de HPC, este mayor grado de flexibilidad se traduce en un aumento hasta 2x de la productividad de todo el sistema al mismo tiempo que se reduce el consumo energético en un 15%. Finalmente, también hemos desarrollado un mecanismo de migración de trabajos de la parte GPU de las aplicaciones que ha sido integrado dentro del framework rCUDA. Este mecanismo de migración ha sido evaluado y los resultados muestran claramente que, a cambio de una pequeña sobrecarga, alrededor de 400 milisegundos, en el tiempo de ejecución de las aplicaciones, es una potente herramienta con la que, de nuevo, aumentar la productividad y reducir el gasto energético del sistema. En resumen, en esta tesis se analizan los principales problemas derivados del uso de las GPUs como aceleradores de cómputo, tanto en entornos HPC como de Cloud Computing, y se demuestra cómo a través del uso del framework rCUDA, estos problemas pueden solucionarse. Además se desarrolla un potente mecanismo de migración de trabajos GPU, que integrado dentro del framework rCUDA, se convierte en una herramienta clave para los futuros planificadores de trabajos en clusters heterogéneos.[CA] En l'última dècada la utilització de la GPGPU(General Purpose computing in Graphics Processing Units; Computació de Propòsit General en Unitats de Processament Gràfic) s'ha tornat extremadament popular en els centres de dades de tot el món. Les GPUs (Graphics Processing Units; Unitats de Processament Gràfic) s'han establert com a elements acceleradors de còmput que s'utilitzen al costat de les CPUs formant sistemes heterogenis. La naturalesa massivament paral·lela de les GPUs, destinades tradicionalment al còmput de gràfics, permet realitzar operacions numèriques amb matrius de dades a gran velocitat degut al gran nombre de nuclis que integren i al gran ample de banda d'accés a memòria que posseeixen. En conseqüència, les aplicacions de tot tipus de camps, com ara química, física, enginyeria, intel·ligència artificial, ciència de materials, etc. que presenten aquest tipus de patrons de còmput es veuen beneficiades reduint dràsticament el seu temps d'execució. En general, l'ús de l'acceleració del còmput en GPUs ha significat un pas endavant i una revolució, però no està exempt de problemes, com ara poden ser problemes d'eficiència energètica, baixa utilització de les GPUs, alts costos d'adquisició i manteniment, etc. En aquesta tesi pretenem analitzar les principals mancances que presenten aquests sistemes heterogenis i proposar solucions basades en l'ús de la virtualització remota de GPUs. Per a això hem utilitzat l'eina rCUDA, desenvolupada a la Universitat Politècnica de València, ja que multitud de publicacions l'avalen com el framework de virtualització remota de GPUs més avançat de l'actualitat. Els resultats obtinguts en aquesta tesi mostren que l'ús de rCUDA en entorns de Cloud Computing incrementa el grau de llibertat del sistema, ja que permet crear instàncies virtuals de les GPUs físiques totalment a mida de les necessitats de cadascuna de les màquines virtuals. En entorns HPC (High Performance Computing; Computació d'Altes Prestacions), rCUDA també proporciona un major grau de flexibilitat en l'ús de les GPUs de tot el clúster de còmput, ja que permet desacoblar totalment la part CPU de la part GPU de les aplicacions. A més, les GPUs poden estar en qualsevol node del clúster, sense importar el node en el qual s'està executant la part CPU de l'aplicació. En general, tant per a Cloud Computing com en el cas del HPC, aquest major grau de flexibilitat es tradueix en un augment fins 2x de la productivitat de tot el sistema al mateix temps que es redueix el consum energètic en aproximadament un 15%. Finalment, també hem desenvolupat un mecanisme de migració de treballs de la part GPU de les aplicacions que ha estat integrat dins del framework rCUDA. Aquest mecanisme de migració ha estat avaluat i els resultats mostren clarament que, a canvi d'una petita sobrecàrrega, al voltant de 400 mil·lisegons, en el temps d'execució de les aplicacions, és una potent eina amb la qual, de nou, augmentar la productivitat i reduir la despesa energètica de sistema. En resum, en aquesta tesi s'analitzen els principals problemes derivats de l'ús de les GPUs com acceleradors de còmput, tant en entorns HPC com de Cloud Computing, i es demostra com a través de l'ús del framework rCUDA, aquests problemes poden solucionar-se. A més es desenvolupa un potent mecanisme de migració de treballs GPU, que integrat dins del framework rCUDA, esdevé una eina clau per als futurs planificadors de treballs en clústers heterogenis.[EN] In the last decade the use of GPGPU (General Purpose computing in Graphics Processing Units) has become extremely popular in data centers around the world. GPUs (Graphics Processing Units) have been established as computational accelerators that are used alongside CPUs to form heterogeneous systems. The massively parallel nature of GPUs, traditionally intended for graphics computing, allows to perform numerical operations with data arrays at high speed. This is achieved thanks to the large number of cores GPUs integrate and the large bandwidth of memory access. Consequently, applications of all kinds of fields, such as chemistry, physics, engineering, artificial intelligence, materials science, and so on, presenting this type of computational patterns are benefited by drastically reducing their execution time. In general, the use of computing acceleration provided by GPUs has meant a step forward and a revolution, but it is not without problems, such as energy efficiency problems, low utilization of GPUs, high acquisition and maintenance costs, etc. In this PhD thesis we aim to analyze the main shortcomings of these heterogeneous systems and propose solutions based on the use of remote GPU virtualization. To that end, we have used the rCUDA middleware, developed at Universitat Politècnica de València. Many publications support rCUDA as the most advanced remote GPU virtualization framework nowadays. The results obtained in this PhD thesis show that the use of rCUDA in Cloud Computing environments increases the degree of freedom of the system, as it allows to create virtual instances of the physical GPUs fully tailored to the needs of each of the virtual machines. In HPC (High Performance Computing) environments, rCUDA also provides a greater degree of flexibility in the use of GPUs throughout the computing cluster, as it allows the CPU part to be completely decoupled from the GPU part of the applications. In addition, GPUs can be on any node in the cluster, regardless of the node on which the CPU part of the application is running. In general, both for Cloud Computing and in the case of HPC, this greater degree of flexibility translates into an up to 2x increase in system-wide throughput while reducing energy consumption by approximately 15%. Finally, we have also developed a job migration mechanism for the GPU part of applications that has been integrated within the rCUDA middleware. This migration mechanism has been evaluated and the results clearly show that, in exchange for a small overhead of about 400 milliseconds in the execution time of the applications, it is a powerful tool with which, again, we can increase productivity and reduce energy foot print of the computing system. In summary, this PhD thesis analyzes the main problems arising from the use of GPUs as computing accelerators, both in HPC and Cloud Computing environments, and demonstrates how thanks to the use of the rCUDA middleware these problems can be addressed. In addition, a powerful GPU job migration mechanism is being developed, which, integrated within the rCUDA framework, becomes a key tool for future job schedulers in heterogeneous clusters.This work jointly supported by the Fundación Séneca (Agencia Regional de Ciencia y Tecnología, Región de Murcia) under grants (20524/PDC/18, 20813/PI/18 and 20988/PI/18) and by the Spanish MEC and European Commission FEDER under grants TIN2015-66972-C5-3-R, TIN2016-78799-P and CTQ2017-87974-R (AEI/FEDER, UE). We also thank NVIDIA for hardware donation under GPU Educational Center 2014-2016 and Research Center 2015-2016. The authors thankfully acknowledge the computer resources at CTE-POWER and the technical support provided by Barcelona Supercomputing Center - Centro Nacional de Supercomputación (RES-BCV-2018-3-0008). Furthermore, researchers from Universitat Politècnica de València are supported by the Generalitat Valenciana under Grant PROMETEO/2017/077. Authors are also grateful for the generous support provided by Mellanox Technologies Inc. Prof. Pradipta Purkayastha, from Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, is acknowledged for kindly providing the initial ligand and DNA structures.Prades Gasulla, J. (2021). Improving Performance and Energy Efficiency of Heterogeneous Systems with rCUDA [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/168081TESISCompendi

Cloud scheduling optimization: a reactive model to enable dynamic deployment of virtual machines instantiations

This study proposes a model for supporting the decision making process of the cloud policy for the deployment of virtual machines in cloud environments. We explore two configurations, the static case in which virtual machines are generated according to the cloud orchestration, and the dynamic case in which virtual machines are reactively adapted according to the job submissions, using migration, for optimizing performance time metrics. We integrate both solutions in the same simulator for measuring the performance of various combinations of virtual machines, jobs and hosts in terms of the average execution and total simulation time. We conclude that the dynamic configuration is prosperus as it offers optimized job execution performance

Design and Implementation of a Distributed Middleware for Parallel Execution of Legacy Enterprise Applications

A typical enterprise uses a local area network of computers to perform its business. During the off-working hours, the computational capacities of these networked computers are underused or unused. In order to utilize this computational capacity an application has to be recoded to exploit concurrency inherent in a computation which is clearly not possible for legacy applications without any source code. This thesis presents the design an implementation of a distributed middleware which can automatically execute a legacy application on multiple networked computers by parallelizing it. This middleware runs multiple copies of the binary executable code in parallel on different hosts in the network. It wraps up the binary executable code of the legacy application in order to capture the kernel level data access system calls and perform them distributively over multiple computers in a safe and conflict free manner. The middleware also incorporates a dynamic scheduling technique to execute the target application in minimum time by scavenging the available CPU cycles of the hosts in the network. This dynamic scheduling also supports the CPU availability of the hosts to change over time and properly reschedule the replicas performing the computation to minimize the execution time. A prototype implementation of this middleware has been developed as a proof of concept of the design. This implementation has been evaluated with a few typical case studies and the test results confirm that the middleware works as expected

Decentralized Resource Availability Prediction in Peer-to-Peer Desktop Grids

Grid computing is a form of distributed computing which is used by an organiza­ tion to handle its long-running computational tasks. Volunteer computing (desktop grid) is a type of grid computing that uses idle CPU cycles donated voluntarily by users, to run its tasks. In a desktop grid model, the resources are not dedicated. The job (computational task) is submitted for execution in the resource only when the resource is idle. There is no guarantee that the job which has started to execute in a resource will complete its execution without any disruption from user activity (such as keyboard click or mouse move). This problem becomes more challenging in a Peer-to-Peer (P2P) model of desktop grids where there is no central server which takes the decision on whether to allocate a job to a resource. In this thesis we propose and implement a P2P desktop grid framework which does resource availability prediction. We try to improve the predictability of the system, by submitting the jobs on machines which have a higher probability of being available at a given time. We benchmark our framework and provide an analysis of our results