Isomorphic Strategy for Processor Allocation in k-Ary n-Cube Systems

Due to its topological generality and flexibility, the k-ary n-cube architecture has been actively researched for various applications. However, the processor allocation problem has not been adequately addressed for the k-ary n-cube architecture, even though it has been studied extensively for hypercubes and meshes. The earlier k-ary n-cube allocation schemes based on conventional slice partitioning suffer from internal fragmentation of processors. In contrast, algorithms based on job-based partitioning alleviate the fragmentation problem but require higher time complexity. This paper proposes a new allocation scheme based on isomorphic partitioning, where the processor space is partitioned into higher dimensional isomorphic subcubes. The proposed scheme minimizes the fragmentation problem and is general in the sense that any size request can be supported and the host architecture need not be isomorphic. Extensive simulation study reveals that the proposed scheme significantly outperforms earlier schemes in terms of mean response time for practical size k-ary and n-cube architectures. The simulation results also show that reduction of external fragmentation is more substantial than internal fragmentation with the proposed scheme

Isomorphic Strategy for Processor Allocation in k-Ary n-Cube Systems

Due to its topological generality and flexibility, the k-ary n-cube architecture has been actively researched for various applications. However, the processor allocation problem has not been adequately addressed for the k-ary n-cube architecture, even though it has been studied extensively for hypercubes and meshes. The earlier k-ary n-cube allocation schemes based on conventional slice partitioning suffer from internal fragmentation of processors. In contrast, algorithms based on job-based partitioning alleviate the fragmentation problem but require higher time complexity. This paper proposes a new allocation scheme based on isomorphic partitioning, where the processor space is partitioned into higher dimensional isomorphic subcubes. The proposed scheme minimizes the fragmentation problem and is general in the sense that any size request can be supported and the host architecture need not be isomorphic. Extensive simulation study reveals that the proposed scheme significantly outperforms earlier schemes in terms of mean response time for practical size k-ary and n-cube architectures. The simulation results also show that reduction of external fragmentation is more substantial than internal fragmentation with the proposed scheme

Topology Agnostic Methods for Routing, Reconfiguration and Virtualization of Interconnection Networks

Modern computing systems, such as supercomputers, data centers and multicore chips, generally require efficient communication between their different system units; tolerance towards component faults; flexibility to expand or merge; and a high utilization of their resources. Interconnection networks are used in a variety of such computing systems in order to enable communication between their diverse system units. Investigation and proposal of new or improved solutions to topology agnostic routing and reconfiguration of interconnection networks are main objectives of this thesis. In addition, topology agnostic routing and reconfiguration algorithms are utilized in the development of new and flexible approaches to processor allocation. The thesis aims to present versatile solutions that can be used for the interconnection networks of a number of different computing systems. No particular routing algorithm was specified for an interconnection network technology which is now incorporated in Dolphin Express. The thesis states a set of criteria for a suitable routing algorithm, evaluates a number of existing routing algorithms, and recommend that one of the algorithms – which fulfils all of the criteria – is used. Further investigations demonstrate how this routing algorithm inherently supports fault-tolerance, and how it can be optimized for some network topologies. These considerations are also relevant for the InfiniBand interconnection network technology. Reconfiguration of interconnection networks (change of routing function) is a deadlock prone process. Some existing reconfiguration strategies include deadlock avoidance mechanisms that significantly reduce the network service offered to running applications. The thesis expands the area of application for one of the most versatile and efficient reconfiguration algorithms available in the literature, and proposes an optimization of this algorithm that improves the network service offered to running applications. Moreover, a new reconfiguration algorithm is presented that supports a replacement of the routing function without causing performance penalties. Processor allocation strategies that guarantee traffic-containment commonly pose strict requirements on the shape of partitions, and thus achieve only a limited utilization of a system’s computing resources. The thesis introduces two new approaches that are more flexible. Both approaches utilize the properties of a topology agnostic routing algorithm in order to enforce traffic-containment within arbitrarily shaped partitions. Consequently, a high resource utilization as well as isolation of traffic between different partitions is achieved

Automating Topology Aware Mapping for Supercomputers

Petascale machines with hundreds of thousands of cores are being built. These machines have varying interconnect topologies and large network diameters. Computation is cheap and communication on the network is becoming the bottleneck for scaling of parallel applications. Network contention, specifically, is becoming an increasingly important factor affecting overall performance. The broad goal of this dissertation is performance optimization of parallel applications through reduction of network contention. Most parallel applications have a certain communication topology. Mapping of tasks in a parallel application based on their communication graph, to the physical processors on a machine can potentially lead to performance improvements. Mapping of the communication graph for an application on to the interconnect topology of a machine while trying to localize communication is the research problem under consideration. The farther different messages travel on the network, greater is the chance of resource sharing between messages. This can create contention on the network for networks commonly used today. Evaluative studies in this dissertation show that on IBM Blue Gene and Cray XT machines, message latencies can be severely affected under contention. Realizing this fact, application developers have started paying attention to the mapping of tasks to physical processors to minimize contention. Placement of communicating tasks on nearby physical processors can minimize the distance traveled by messages and reduce the chances of contention. Performance improvements through topology aware placement for applications such as NAMD and OpenAtom are used to motivate this work. Building on these ideas, the dissertation proposes algorithms and techniques for automatic mapping of parallel applications to relieve the application developers of this burden. The effect of contention on message latencies is studied in depth to guide the design of mapping algorithms. The hop-bytes metric is proposed for the evaluation of mapping algorithms as a better metric than the previously used maximum dilation metric. The main focus of this dissertation is on developing topology aware mapping algorithms for parallel applications with regular and irregular communication patterns. The automatic mapping framework is a suite of such algorithms with capabilities to choose the best mapping for a problem with a given communication graph. The dissertation also briefly discusses completely distributed mapping techniques which will be imperative for machines of the future.published or submitted for publicationnot peer reviewe

Hardware/Software Co-design for Multicore Architectures

Siirretty Doriast

Resource placement, data rearrangement, and Hamiltonian cycles in torus networks

Many parallel machines, both commercial and experimental, have been/are being designed with toroidal interconnection networks. For a given number of nodes, the torus has a relatively larger diameter, but better cost/performance tradeoffs, such as higher channel bandwidth, and lower node degree, when compared to the hypercube. Thus, the torus is becoming a popular topology for the interconnection network of a high performance parallel computers. In a multicomputer, the resources, such as I/O devices or software packages, are distributed over the networks. The first part of the thesis investigates efficient methods of distributing resources in a torus network. Three classes of placement methods are studied. They are (1) distant-t placement problem: in this case, any non-resource node is at a distance of at most t from some resource nodes, (2) j-adjacency problem: here, a non-resource node is adjacent to at least j resource nodes, and (3) generalized placement problem: a non-resource node must be a distance of at most t from at least j resource nodes. This resource placement technique can be applied to allocating spare processors to provide fault-tolerance in the case of the processor failures. Some efficient spare processor placement methods and reconfiguration schemes in the case of processor failures are also described. In a torus based parallel system, some algorithms give best performance if the data are distributed to processors numbered in Cartesian order; in some other cases, it is better to distribute the data to processors numbered in Gray code order. Since the placement patterns may be changed dynamically, it is essential to find efficient methods of rearranging the data from Gray code order to Cartesian order and vice versa. In the second part of the thesis, some efficient methods for data transfer from Cartesian order to radix order and vice versa are developed. The last part of the thesis gives results on generating edge disjoint Hamiltonian cycles in k-ary n-cubes, hypercubes, and 2D tori. These edge disjoint cycles are quite useful for many communication algorithms

Exploiting Properties of CMP Cache Traffic in Designing Hybrid Packet/Circuit Switched NoCs

Chip multiprocessors with few to tens of processing cores are already commercially available. Increased scaling of technology is making it feasible to integrate even more cores on a single chip. Providing the cores with fast access to data is vital to overall system performance. When a core requires access to a piece of data, the core's private cache memory is searched first. If a miss occurs, the data is looked up in the next level(s) of the memory hierarchy, where often one or more levels of cache are shared between two or more cores. Communication between the cores and the slices of the on-chip shared cache is carried through the network-on-chip(NoC). Interestingly, the cache and NoC mutually affect the operation of each other; communication over the NoC affects the access latency of cache data, while the cache organization generates the coherence and data messages, thus affecting the communication patterns and latency over the NoC. This thesis considers hybrid packet/circuit switched NoCs, i.e., packet switched NoCs enhanced with the ability to configure circuits. The communication and performance benefit that come from using circuits is predicated on amortizing the time cost incurred for configuring the circuits. To address this challenge, NoC designs are proposed that take advantage of properties of the cache traffic, namely temporal locality and predictability, to amortize or hide the circuit configuration time cost. First, a coarse-grained circuit configuration policy is proposed that exploits the temporal locality in the cache traffic to periodically configure circuits for the heavily communicating nodes. This allows the design of a locality-aware cache that promotes temporal communication locality through data placement, while designing suitable data replacement and migration policies. Next, a fine-grained configuration policy, called Déjà Vu switching, is proposed for leveraging predictability of data messages by initiating a circuit configuration as soon as a cache hit is detected and before the data becomes available. Its benefit is demonstrated for saving interconnect energy in multi-plane NoCs. Finally, a more proactive configuration policy is proposed for fast caches, where circuit reservations are initiated by request messages, which can greatly improve communication latency and system performance

Improving efficiency and resilience in large-scale computing systems through analytics and data-driven management

Applications running in large-scale computing systems such as high performance computing (HPC) or cloud data centers are essential to many aspects of modern society, from weather forecasting to financial services. As the number and size of data centers increase with the growing computing demand, scalable and efficient management becomes crucial. However, data center management is a challenging task due to the complex interactions between applications, middleware, and hardware layers such as processors, network, and cooling units. This thesis claims that to improve robustness and efficiency of large-scale computing systems, significantly higher levels of automated support than what is available in today's systems are needed, and this automation should leverage the data continuously collected from various system layers. Towards this claim, we propose novel methodologies to automatically diagnose the root causes of performance and configuration problems and to improve efficiency through data-driven system management. We first propose a framework to diagnose software and hardware anomalies that cause undesired performance variations in large-scale computing systems. We show that by training machine learning models on resource usage and performance data collected from servers, our approach successfully diagnoses 98% of the injected anomalies at runtime in real-world HPC clusters with negligible computational overhead. We then introduce an analytics framework to address another major source of performance anomalies in cloud data centers: software misconfigurations. Our framework discovers and extracts configuration information from cloud instances such as containers or virtual machines. This is the first framework to provide comprehensive visibility into software configurations in multi-tenant cloud platforms, enabling systematic analysis for validating the correctness of software configurations. This thesis also contributes to the design of robust and efficient system management methods that leverage continuously monitored resource usage data. To improve performance under power constraints, we propose a workload- and cooling-aware power budgeting algorithm that distributes the available power among servers and cooling units in a data center, achieving up to 21% improvement in throughput per Watt compared to the state-of-the-art. Additionally, we design a network- and communication-aware HPC workload placement policy that reduces communication overhead by up to 30% in terms of hop-bytes compared to existing policies.2019-07-02T00:00:00