Learning Hybrid Process Models From Events: Process Discovery Without Faking Confidence

Process discovery techniques return process models that are either formal (precisely describing the possible behaviors) or informal (merely a "picture" not allowing for any form of formal reasoning). Formal models are able to classify traces (i.e., sequences of events) as fitting or non-fitting. Most process mining approaches described in the literature produce such models. This is in stark contrast with the over 25 available commercial process mining tools that only discover informal process models that remain deliberately vague on the precise set of possible traces. There are two main reasons why vendors resort to such models: scalability and simplicity. In this paper, we propose to combine the best of both worlds: discovering hybrid process models that have formal and informal elements. As a proof of concept we present a discovery technique based on hybrid Petri nets. These models allow for formal reasoning, but also reveal information that cannot be captured in mainstream formal models. A novel discovery algorithm returning hybrid Petri nets has been implemented in ProM and has been applied to several real-life event logs. The results clearly demonstrate the advantages of remaining "vague" when there is not enough "evidence" in the data or standard modeling constructs do not "fit". Moreover, the approach is scalable enough to be incorporated in industrial-strength process mining tools.Comment: 25 pages, 12 figure

Adding Priority to Event Structures

Event Structures (ESs) are mainly concerned with the representation of causal relationships between events, usually accompanied by other event relations capturing conflicts and disabling. Among the most prominent variants of ESs are Prime ESs, Bundle ESs, Stable ESs, and Dual ESs, which differ in their causality models and event relations. Yet, some application domains require further kinds of relations between events. Here, we add the possibility to express priority relationships among events. We exemplify our approach on Prime, Bundle, Extended Bundle, and Dual ESs. Technically, we enhance these variants in the same way. For each variant, we then study the interference between priority and the other event relations. From this, we extract the redundant priority pairs-notably differing for the types of ESs-that enable us to provide a comparison between the extensions. We also exhibit that priority considerably complicates the definition of partial orders in ESs.Comment: In Proceedings EXPRESS/SOS 2013, arXiv:1307.690

Petri nets for systems and synthetic biology

We give a description of a Petri net-based framework for modelling and analysing biochemical pathways, which uni¯es the qualita- tive, stochastic and continuous paradigms. Each perspective adds its con- tribution to the understanding of the system, thus the three approaches do not compete, but complement each other. We illustrate our approach by applying it to an extended model of the three stage cascade, which forms the core of the ERK signal transduction pathway. Consequently our focus is on transient behaviour analysis. We demonstrate how quali- tative descriptions are abstractions over stochastic or continuous descrip- tions, and show that the stochastic and continuous models approximate each other. Although our framework is based on Petri nets, it can be applied more widely to other formalisms which are used to model and analyse biochemical networks

Formal Relationships Between Geometrical and Classical Models for Concurrency

A wide variety of models for concurrent programs has been proposed during the past decades, each one focusing on various aspects of computations: trace equivalence, causality between events, conflicts and schedules due to resource accesses, etc. More recently, models with a geometrical flavor have been introduced, based on the notion of cubical set. These models are very rich and expressive since they can represent commutation between any bunch of events, thus generalizing the principle of true concurrency. While they seem to be very promising - because they make possible the use of techniques from algebraic topology in order to study concurrent computations - they have not yet been precisely related to the previous models, and the purpose of this paper is to fill this gap. In particular, we describe an adjunction between Petri nets and cubical sets which extends the previously known adjunction between Petri nets and asynchronous transition systems by Nielsen and Winskel

Independence and concurrent separation logic

A compositional Petri net-based semantics is given to a simple language allowing pointer manipulation and parallelism. The model is then applied to give a notion of validity to the judgements made by concurrent separation logic that emphasizes the process-environment duality inherent in such rely-guarantee reasoning. Soundness of the rules of concurrent separation logic with respect to this definition of validity is shown. The independence information retained by the Petri net model is then exploited to characterize the independence of parallel processes enforced by the logic. This is shown to permit a refinement operation capable of changing the granularity of atomic actions