A NOVEL ADAPTIVE CHECKPOINTING METHOD BASED ON INFORMATION OBTAINED FROM WORKFLOW STRUCTURE

Scientific workflows are data- and compute-intensive; thus, they may run for days or even weeks on parallel and distributed infrastructures such as grids, supercomputers, and clouds. In these high-performance computing infrastructures, the number of failures that can arise during scientific-workflow enactment can be high, so the use of fault-tolerance techniques is unavoidable. The most-frequently used fault-tolerance technique is taking checkpoints from time to time; when failure is detected, the last consistent state is restored. One of the most-critical factors that has great impact on the effectiveness of the checkpointing method is the checkpointing interval. In this work, we propose a Static (Wsb) and an Adaptive (AWsb) Workflow Structure Based checkpointing algorithm. Our results showed that, compared to the optimal checkpointing strategy, the static algorithm may decrease the checkpointing overhead by as much as 33% without affecting the total processing time of workflow execution. The adaptive algorithm may further decrease this overhead while keeping the overall processing time at its necessary minimum

A NOVEL ADAPTIVE CHECKPOINTING METHOD BASED ON INFORMATION OBTAINED FROM WORKFLOW STRUCTURE

Scientific workflows are data- and compute-intensive; thus, they may run for days or even weeks on parallel and distributed infrastructures such as grids, supercomputers, and clouds. In these high-performance computing infrastructures, the number of failures that can arise during scientific-workflow enactment can be high, so the use of fault-tolerance techniques is unavoidable. The most-frequently used fault-tolerance technique is taking checkpoints from time to time; when failure is detected, the last consistent state is restored. One of the most-critical factors that has great impact on the effectiveness of the checkpointing method is the checkpointing interval. In this work, we propose a Static (Wsb) and an Adaptive (AWsb) Workflow Structure Based checkpointing algorithm. Our results showed that, compared to the optimal checkpointing strategy, the static algorithm may decrease the checkpointing overhead by as much as 33% without affecting the total processing time of workflow execution. The adaptive algorithm may further decrease this overhead while keeping the overall processing time at its necessary minimum

Data-Aware Scheduling Strategy for Scientific Workflow Applications in IaaS Cloud Computing

Scientific workflows benefit from the cloud computing paradigm, which offers access to virtual resources provisioned on pay-as-you-go and on-demand basis. Minimizing resources costs to meet user’s budget is very important in a cloud environment. Several optimization approaches have been proposed to improve the performance and the cost of data-intensive scientific Workflow Scheduling (DiSWS) in cloud computing. However, in the literature, the majority of the DiSWS approaches focused on the use of heuristic and metaheuristic as an optimization method. Furthermore, the tasks hierarchy in data-intensive scientific workflows has not been extensively explored in the current literature. Specifically, in this paper, a data-intensive scientific workflow is represented as a hierarchy, which specifies hierarchical relations between workflow tasks, and an approach for data-intensive workflow scheduling applications is proposed. In this approach, first, the datasets and workflow tasks are modeled as a conditional probability matrix (CPM). Second, several data transformation and hierarchical clustering are applied to the CPM structure to determine the minimum number of virtual machines needed for the workflow execution. In this approach, the hierarchical clustering is done with respect to the budget imposed by the user. After data transformation and hierarchical clustering, the amount of data transmitted between clusters can be reduced, which can improve cost and makespan of the workflow by optimizing the use of virtual resources and network bandwidth. The performance and cost are analyzed using an extension of Cloudsim simulation tool and compared with existing multi-objective approaches. The results demonstrate that our approach reduces resources cost with respect to the user budgets

Resilience for large ensemble computations

With the increasing power of supercomputers, ever more detailed models of physical systems can be simulated, and ever larger problem sizes can be considered for any kind of numerical system. During the last twenty years the performance of the fastest clusters went from the teraFLOPS domain (ASCI RED: 2.3 teraFLOPS) to the pre-exaFLOPS domain (Fugaku: 442 petaFLOPS), and we will soon have the first supercomputer with a peak performance cracking the exaFLOPS (El Capitan: 1.5 exaFLOPS). Ensemble techniques experience a renaissance with the availability of those extreme scales. Especially recent techniques, such as particle filters, will benefit from it. Current ensemble methods in climate science, such as ensemble Kalman filters, exhibit a linear dependency between the problem size and the ensemble size, while particle filters show an exponential dependency. Nevertheless, with the prospect of massive computing power come challenges such as power consumption and fault-tolerance. The mean-time-between-failures shrinks with the number of components in the system, and it is expected to have failures every few hours at exascale. In this thesis, we explore and develop techniques to protect large ensemble computations from failures. We present novel approaches in differential checkpointing, elastic recovery, fully asynchronous checkpointing, and checkpoint compression. Furthermore, we design and implement a fault-tolerant particle filter with pre-emptive particle prefetching and caching. And finally, we design and implement a framework for the automatic validation and application of lossy compression in ensemble data assimilation. Altogether, we present five contributions in this thesis, where the first two improve state-of-the-art checkpointing techniques, and the last three address the resilience of ensemble computations. The contributions represent stand-alone fault-tolerance techniques, however, they can also be used to improve the properties of each other. For instance, we utilize elastic recovery (2nd contribution) for mitigating resiliency in an online ensemble data assimilation framework (3rd contribution), and we built our validation framework (5th contribution) on top of our particle filter implementation (4th contribution). We further demonstrate that our contributions improve resilience and performance with experiments on various architectures such as Intel, IBM, and ARM processors.Amb l’increment de les capacitats de còmput dels supercomputadors, es poden simular models de sistemes físics encara més detallats, i es poden resoldre problemes de més grandària en qualsevol tipus de sistema numèric. Durant els últims vint anys, el rendiment dels clústers més ràpids ha passat del domini dels teraFLOPS (ASCI RED: 2.3 teraFLOPS) al domini dels pre-exaFLOPS (Fugaku: 442 petaFLOPS), i aviat tindrem el primer supercomputador amb un rendiment màxim que sobrepassa els exaFLOPS (El Capitan: 1.5 exaFLOPS). Les tècniques d’ensemble experimenten un renaixement amb la disponibilitat d’aquestes escales tan extremes. Especialment les tècniques més noves, com els filtres de partícules, se¿n beneficiaran. Els mètodes d’ensemble actuals en climatologia, com els filtres d’ensemble de Kalman, exhibeixen una dependència lineal entre la mida del problema i la mida de l’ensemble, mentre que els filtres de partícules mostren una dependència exponencial. No obstant, juntament amb les oportunitats de poder computar massivament, apareixen desafiaments com l’alt consum energètic i la necessitat de tolerància a errors. El temps de mitjana entre errors es redueix amb el nombre de components del sistema, i s’espera que els errors s’esdevinguin cada poques hores a exaescala. En aquesta tesis, explorem i desenvolupem tècniques per protegir grans càlculs d’ensemble d’errors. Presentem noves tècniques en punts de control diferencials, recuperació elàstica, punts de control totalment asincrònics i compressió de punts de control. A més, dissenyem i implementem un filtre de partícules tolerant a errors amb captació i emmagatzematge en caché de partícules de manera preventiva. I finalment, dissenyem i implementem un marc per la validació automàtica i l’aplicació de compressió amb pèrdua en l’assimilació de dades d’ensemble. En total, en aquesta tesis presentem cinc contribucions, les dues primeres de les quals milloren les tècniques de punts de control més avançades, mentre que les tres restants aborden la resiliència dels càlculs d’ensemble. Les contribucions representen tècniques independents de tolerància a errors; no obstant, també es poden utilitzar per a millorar les propietats de cadascuna. Per exemple, utilitzem la recuperació elàstica (segona contribució) per a mitigar la resiliència en un marc d’assimilació de dades d’ensemble en línia (tercera contribució), i construïm el nostre marc de validació (cinquena contribució) sobre la nostra implementació del filtre de partícules (quarta contribució). A més, demostrem que les nostres contribucions milloren la resiliència i el rendiment amb experiments en diverses arquitectures, com processadors Intel, IBM i ARM.Postprint (published version

Harnessing the Power of Many: Extensible Toolkit for Scalable Ensemble Applications

Many scientific problems require multiple distinct computational tasks to be executed in order to achieve a desired solution. We introduce the Ensemble Toolkit (EnTK) to address the challenges of scale, diversity and reliability they pose. We describe the design and implementation of EnTK, characterize its performance and integrate it with two distinct exemplar use cases: seismic inversion and adaptive analog ensembles. We perform nine experiments, characterizing EnTK overheads, strong and weak scalability, and the performance of two use case implementations, at scale and on production infrastructures. We show how EnTK meets the following general requirements: (i) implementing dedicated abstractions to support the description and execution of ensemble applications; (ii) support for execution on heterogeneous computing infrastructures; (iii) efficient scalability up to O(10^4) tasks; and (iv) fault tolerance. We discuss novel computational capabilities that EnTK enables and the scientific advantages arising thereof. We propose EnTK as an important addition to the suite of tools in support of production scientific computing

A survey of general-purpose experiment management tools for distributed systems

International audienceIn the field of large-scale distributed systems, experimentation is particularly difficult. The studied systems are complex, often nondeterministic and unreliable, software is plagued with bugs, whereas the experiment workflows are unclear and hard to reproduce. These obstacles led many independent researchers to design tools to control their experiments, boost productivity and improve quality of scientific results. Despite much research in the domain of distributed systems experiment management, the current fragmentation of efforts asks for a general analysis. We therefore propose to build a framework to uncover missing functionality of these tools, enable meaningful comparisons be-tween them and find recommendations for future improvements and research. The contribution in this paper is twofold. First, we provide an extensive list of features offered by general-purpose experiment management tools dedicated to distributed systems research on real platforms. We then use it to assess existing solutions and compare them, outlining possible future paths for improvements

QoS-aware predictive workflow scheduling

This research places the basis of QoS-aware predictive workflow scheduling. This research novel contributions will open up prospects for future research in handling complex big workflow applications with high uncertainty and dynamism. The results from the proposed workflow scheduling algorithm shows significant improvement in terms of the performance and reliability of the workflow applications

Dynamic application partitioning and task-scheduling secure schemes for biosensor healthcare workload in mobile edge cloud

Currently, the use of biosensor-enabled mobile healthcare workflow applications in mobile edge-cloud-enabled systems is increasing progressively. These applications are heavyweight and divided between a thin client mobile device and a thick server edge cloud for execution. Application partitioning is a mechanism in which applications are divided based on resource and energy parameters. However, existing application-partitioning schemes widely ignore security aspects for healthcare applications. This study devises a dynamic application-partitioning workload task-scheduling-secure (DAPWTS) algorithm framework that consists of different schemes, such as min-cut algorithm, searching node, energy-enabled scheduling, failure scheduling, and security schemes. The goal is to minimize the energy consumption of nodes and divide the application between local nodes and edge nodes by applying the secure min-cut algorithm. Furthermore, the study devises the secure-min-cut algorithm, which aims to migrate data between nodes in a secure form during application partitioning in the system. After partitioning the applications, the node-search algorithm searches optimally to run applications under their deadlines. The energy and failure schemes maintain the energy consumption of the nodes and the failure of the system. Simulation results show that DAPWTS outperforms existing baseline approaches by 30% in terms of energy consumption, deadline, and failure of applications in the system.publishedVersio