Feature Extraction and Classification Based on Spatial-Spectral ConvLSTM Neural Network for Hyperspectral Images

In recent years, deep learning has presented a great advance in hyperspectral image (HSI) classification. Particularly, Long Short-Term Memory (LSTM), as a special deep learning structure, has shown great ability in modeling long-term dependencies in the time dimension of video or the spectral dimension of HSIs. However, the loss of spatial information makes it quite difficult to obtain the better performance. In order to address this problem, two novel deep models are proposed to extract more discriminative spatial-spectral features by exploiting the Convolutional LSTM (ConvLSTM) for the first time. By taking the data patch in a local sliding window as the input of each memory cell band by band, the 2-D extended architecture of LSTM is considered for building the spatial-spectral ConvLSTM 2-D Neural Network (SSCL2DNN) to model long-range dependencies in the spectral domain. To take advantage of spatial and spectral information more effectively for extracting a more discriminative spatial-spectral feature representation, the spatial-spectral ConvLSTM 3-D Neural Network (SSCL3DNN) is further proposed by extending LSTM to 3-D version. The experiments, conducted on three commonly used HSI data sets, demonstrate that the proposed deep models have certain competitive advantages and can provide better classification performance than other state-of-the-art approaches

3D Robot Pose Estimation from 2D Images

This paper considers the task of locating articulated poses of multiple robots in images. Our approach simultaneously infers the number of robots in a scene, identifies joint locations and estimates sparse depth maps around joint locations. The proposed method applies staged convolutional feature detectors to 2D image inputs and computes robot instance masks using a recurrent network architecture. In addition, regression maps of most likely joint locations in pixel coordinates together with depth information are computed. Compositing 3D robot joint kinematics is accomplished by applying masks to joint readout maps. Our end-to-end formulation is in contrast to previous work in which the composition of robot joints into kinematics is performed in a separate post-processing step. Despite the fact that our models are trained on artificial data, we demonstrate generalizability to real world images

SFCN-OPI: Detection and Fine-grained Classification of Nuclei Using Sibling FCN with Objectness Prior Interaction

Cell nuclei detection and fine-grained classification have been fundamental yet challenging problems in histopathology image analysis. Due to the nuclei tiny size, significant inter-/intra-class variances, as well as the inferior image quality, previous automated methods would easily suffer from limited accuracy and robustness. In the meanwhile, existing approaches usually deal with these two tasks independently, which would neglect the close relatedness of them. In this paper, we present a novel method of sibling fully convolutional network with prior objectness interaction (called SFCN-OPI) to tackle the two tasks simultaneously and interactively using a unified end-to-end framework. Specifically, the sibling FCN branches share features in earlier layers while holding respective higher layers for specific tasks. More importantly, the detection branch outputs the objectness prior which dynamically interacts with the fine-grained classification sibling branch during the training and testing processes. With this mechanism, the fine-grained classification successfully focuses on regions with high confidence of nuclei existence and outputs the conditional probability, which in turn benefits the detection through back propagation. Extensive experiments on colon cancer histology images have validated the effectiveness of our proposed SFCN-OPI and our method has outperformed the state-of-the-art methods by a large margin.Comment: Accepted at AAAI 201

A Survey on Deep Learning in Medical Image Analysis

Deep learning algorithms, in particular convolutional networks, have rapidly become a methodology of choice for analyzing medical images. This paper reviews the major deep learning concepts pertinent to medical image analysis and summarizes over 300 contributions to the field, most of which appeared in the last year. We survey the use of deep learning for image classification, object detection, segmentation, registration, and other tasks and provide concise overviews of studies per application area. Open challenges and directions for future research are discussed.Comment: Revised survey includes expanded discussion section and reworked introductory section on common deep architectures. Added missed papers from before Feb 1st 201

CIA-Net: Robust Nuclei Instance Segmentation with Contour-aware Information Aggregation

Accurate segmenting nuclei instances is a crucial step in computer-aided image analysis to extract rich features for cellular estimation and following diagnosis as well as treatment. While it still remains challenging because the wide existence of nuclei clusters, along with the large morphological variances among different organs make nuclei instance segmentation susceptible to over-/under-segmentation. Additionally, the inevitably subjective annotating and mislabeling prevent the network learning from reliable samples and eventually reduce the generalization capability for robustly segmenting unseen organ nuclei. To address these issues, we propose a novel deep neural network, namely Contour-aware Informative Aggregation Network (CIA-Net) with multi-level information aggregation module between two task-specific decoders. Rather than independent decoders, it leverages the merit of spatial and texture dependencies between nuclei and contour by bi-directionally aggregating task-specific features. Furthermore, we proposed a novel smooth truncated loss that modulates losses to reduce the perturbation from outliers. Consequently, the network can focus on learning from reliable and informative samples, which inherently improves the generalization capability. Experiments on the 2018 MICCAI challenge of Multi-Organ-Nuclei-Segmentation validated the effectiveness of our proposed method, surpassing all the other 35 competitive teams by a significant margin.Comment: Accepted for the 26th Conference on Information Processing in Medical Imaging (IPMI 2019

Deep Radiomics for Brain Tumor Detection and Classification from Multi-Sequence MRI

Glioma constitutes 80% of malignant primary brain tumors and is usually classified as HGG and LGG. The LGG tumors are less aggressive, with slower growth rate as compared to HGG, and are responsive to therapy. Tumor biopsy being challenging for brain tumor patients, noninvasive imaging techniques like Magnetic Resonance Imaging (MRI) have been extensively employed in diagnosing brain tumors. Therefore automated systems for the detection and prediction of the grade of tumors based on MRI data becomes necessary for assisting doctors in the framework of augmented intelligence. In this paper, we thoroughly investigate the power of Deep ConvNets for classification of brain tumors using multi-sequence MR images. We propose novel ConvNet models, which are trained from scratch, on MRI patches, slices, and multi-planar volumetric slices. The suitability of transfer learning for the task is next studied by applying two existing ConvNets models (VGGNet and ResNet) trained on ImageNet dataset, through fine-tuning of the last few layers. LOPO testing, and testing on the holdout dataset are used to evaluate the performance of the ConvNets. Results demonstrate that the proposed ConvNets achieve better accuracy in all cases where the model is trained on the multi-planar volumetric dataset. Unlike conventional models, it obtains a testing accuracy of 95% for the low/high grade glioma classification problem. A score of 97% is generated for classification of LGG with/without 1p/19q codeletion, without any additional effort towards extraction and selection of features. We study the properties of self-learned kernels/ filters in different layers, through visualization of the intermediate layer outputs. We also compare the results with that of state-of-the-art methods, demonstrating a maximum improvement of 7% on the grading performance of ConvNets and 9% on the prediction of 1p/19q codeletion status

A novel channel pruning method for deep neural network compression

In recent years, deep neural networks have achieved great success in the field of computer vision. However, it is still a big challenge to deploy these deep models on resource-constrained embedded devices such as mobile robots, smart phones and so on. Therefore, network compression for such platforms is a reasonable solution to reduce memory consumption and computation complexity. In this paper, a novel channel pruning method based on genetic algorithm is proposed to compress very deep Convolution Neural Networks (CNNs). Firstly, a pre-trained CNN model is pruned layer by layer according to the sensitivity of each layer. After that, the pruned model is fine-tuned based on knowledge distillation framework. These two improvements significantly decrease the model redundancy with less accuracy drop. Channel selection is a combinatorial optimization problem that has exponential solution space. In order to accelerate the selection process, the proposed method formulates it as a search problem, which can be solved efficiently by genetic algorithm. Meanwhile, a two-step approximation fitness function is designed to further improve the efficiency of genetic process. The proposed method has been verified on three benchmark datasets with two popular CNN models: VGGNet and ResNet. On the CIFAR-100 and ImageNet datasets, our approach outperforms several state-of-the-art methods. On the CIFAR-10 and SVHN datasets, the pruned VGGNet achieves better performance than the original model with 8 times parameters compression and 3 times FLOPs reduction

Deep Facial Expression Recognition: A Survey

With the transition of facial expression recognition (FER) from laboratory-controlled to challenging in-the-wild conditions and the recent success of deep learning techniques in various fields, deep neural networks have increasingly been leveraged to learn discriminative representations for automatic FER. Recent deep FER systems generally focus on two important issues: overfitting caused by a lack of sufficient training data and expression-unrelated variations, such as illumination, head pose and identity bias. In this paper, we provide a comprehensive survey on deep FER, including datasets and algorithms that provide insights into these intrinsic problems. First, we describe the standard pipeline of a deep FER system with the related background knowledge and suggestions of applicable implementations for each stage. We then introduce the available datasets that are widely used in the literature and provide accepted data selection and evaluation principles for these datasets. For the state of the art in deep FER, we review existing novel deep neural networks and related training strategies that are designed for FER based on both static images and dynamic image sequences, and discuss their advantages and limitations. Competitive performances on widely used benchmarks are also summarized in this section. We then extend our survey to additional related issues and application scenarios. Finally, we review the remaining challenges and corresponding opportunities in this field as well as future directions for the design of robust deep FER systems

Activity Recognition based on a Magnitude-Orientation Stream Network

The temporal component of videos provides an important clue for activity recognition, as a number of activities can be reliably recognized based on the motion information. In view of that, this work proposes a novel temporal stream for two-stream convolutional networks based on images computed from the optical flow magnitude and orientation, named Magnitude-Orientation Stream (MOS), to learn the motion in a better and richer manner. Our method applies simple nonlinear transformations on the vertical and horizontal components of the optical flow to generate input images for the temporal stream. Experimental results, carried on two well-known datasets (HMDB51 and UCF101), demonstrate that using our proposed temporal stream as input to existing neural network architectures can improve their performance for activity recognition. Results demonstrate that our temporal stream provides complementary information able to improve the classical two-stream methods, indicating the suitability of our approach to be used as a temporal video representation.Comment: 8 pages, SIBGRAPI 201

Multi-scale Volumes for Deep Object Detection and Localization

This study aims to analyze the benefits of improved multi-scale reasoning for object detection and localization with deep convolutional neural networks. To that end, an efficient and general object detection framework which operates on scale volumes of a deep feature pyramid is proposed. In contrast to the proposed approach, most current state-of-the-art object detectors operate on a single-scale in training, while testing involves independent evaluation across scales. One benefit of the proposed approach is in better capturing of multi-scale contextual information, resulting in significant gains in both detection performance and localization quality of objects on the PASCAL VOC dataset and a multi-view highway vehicles dataset. The joint detection and localization scale-specific models are shown to especially benefit detection of challenging object categories which exhibit large scale variation as well as detection of small objects.Comment: To appear in Pattern Recognition 201