Estimation in Dirichlet random effects models

We develop a new Gibbs sampler for a linear mixed model with a Dirichlet process random effect term, which is easily extended to a generalized linear mixed model with a probit link function. Our Gibbs sampler exploits the properties of the multinomial and Dirichlet distributions, and is shown to be an improvement, in terms of operator norm and efficiency, over other commonly used MCMC algorithms. We also investigate methods for the estimation of the precision parameter of the Dirichlet process, finding that maximum likelihood may not be desirable, but a posterior mode is a reasonable approach. Examples are given to show how these models perform on real data. Our results complement both the theoretical basis of the Dirichlet process nonparametric prior and the computational work that has been done to date.Comment: Published in at http://dx.doi.org/10.1214/09-AOS731 the Annals of Statistics (http://www.imstat.org/aos/) by the Institute of Mathematical Statistics (http://www.imstat.org

Hierarchical spatial models for predicting tree species assemblages across large domains

Spatially explicit data layers of tree species assemblages, referred to as forest types or forest type groups, are a key component in large-scale assessments of forest sustainability, biodiversity, timber biomass, carbon sinks and forest health monitoring. This paper explores the utility of coupling georeferenced national forest inventory (NFI) data with readily available and spatially complete environmental predictor variables through spatially-varying multinomial logistic regression models to predict forest type groups across large forested landscapes. These models exploit underlying spatial associations within the NFI plot array and the spatially-varying impact of predictor variables to improve the accuracy of forest type group predictions. The richness of these models incurs onerous computational burdens and we discuss dimension reducing spatial processes that retain the richness in modeling. We illustrate using NFI data from Michigan, USA, where we provide a comprehensive analysis of this large study area and demonstrate improved prediction with associated measures of uncertainty.Comment: Published in at http://dx.doi.org/10.1214/09-AOAS250 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

Bias in parametric estimation: reduction and useful side-effects

The bias of an estimator is defined as the difference of its expected value from the parameter to be estimated, where the expectation is with respect to the model. Loosely speaking, small bias reflects the desire that if an experiment is repeated indefinitely then the average of all the resultant estimates will be close to the parameter value that is estimated. The current paper is a review of the still-expanding repository of methods that have been developed to reduce bias in the estimation of parametric models. The review provides a unifying framework where all those methods are seen as attempts to approximate the solution of a simple estimating equation. Of particular focus is the maximum likelihood estimator, which despite being asymptotically unbiased under the usual regularity conditions, has finite-sample bias that can result in significant loss of performance of standard inferential procedures. An informal comparison of the methods is made revealing some useful practical side-effects in the estimation of popular models in practice including: i) shrinkage of the estimators in binomial and multinomial regression models that guarantees finiteness even in cases of data separation where the maximum likelihood estimator is infinite, and ii) inferential benefits for models that require the estimation of dispersion or precision parameters