3,747 research outputs found
A cross-center smoothness prior for variational Bayesian brain tissue segmentation
Suppose one is faced with the challenge of tissue segmentation in MR images,
without annotators at their center to provide labeled training data. One option
is to go to another medical center for a trained classifier. Sadly, tissue
classifiers do not generalize well across centers due to voxel intensity shifts
caused by center-specific acquisition protocols. However, certain aspects of
segmentations, such as spatial smoothness, remain relatively consistent and can
be learned separately. Here we present a smoothness prior that is fit to
segmentations produced at another medical center. This informative prior is
presented to an unsupervised Bayesian model. The model clusters the voxel
intensities, such that it produces segmentations that are similarly smooth to
those of the other medical center. In addition, the unsupervised Bayesian model
is extended to a semi-supervised variant, which needs no visual interpretation
of clusters into tissues.Comment: 12 pages, 2 figures, 1 table. Accepted to the International
Conference on Information Processing in Medical Imaging (2019
Quantitative magnetic resonance image analysis via the EM algorithm with stochastic variation
Quantitative Magnetic Resonance Imaging (qMRI) provides researchers insight
into pathological and physiological alterations of living tissue, with the help
of which researchers hope to predict (local) therapeutic efficacy early and
determine optimal treatment schedule. However, the analysis of qMRI has been
limited to ad-hoc heuristic methods. Our research provides a powerful
statistical framework for image analysis and sheds light on future localized
adaptive treatment regimes tailored to the individual's response. We assume in
an imperfect world we only observe a blurred and noisy version of the
underlying pathological/physiological changes via qMRI, due to measurement
errors or unpredictable influences. We use a hidden Markov random field to
model the spatial dependence in the data and develop a maximum likelihood
approach via the Expectation--Maximization algorithm with stochastic variation.
An important improvement over previous work is the assessment of variability in
parameter estimation, which is the valid basis for statistical inference. More
importantly, we focus on the expected changes rather than image segmentation.
Our research has shown that the approach is powerful in both simulation studies
and on a real dataset, while quite robust in the presence of some model
assumption violations.Comment: Published in at http://dx.doi.org/10.1214/07-AOAS157 the Annals of
Applied Statistics (http://www.imstat.org/aoas/) by the Institute of
Mathematical Statistics (http://www.imstat.org
Markov mezĆk a kĂ©pmodellezĂ©sben, alkalmazĂĄsuk az automatikus kĂ©pszegmentĂĄlĂĄs terĂŒletĂ©n = Markovian Image Models: Applications in Unsupervised Image Segmentation
1) KifejlesztettĂŒnk egy olyan szĂn Ă©s textĂșra alapĂș szegmentĂĄlĂł MRF algoritmust, amely alkalmas egy kĂ©p automatikus szegmentĂĄlĂĄsĂĄt elvĂ©gezni. Az eredmĂ©nyeinket az Image and Vision Computing folyĂłiratban publikĂĄltuk. 2) KifejlesztettĂŒnk egy Reversible Jump Markov Chain Monte Carlo technikĂĄn alapulĂł automatikus kĂ©pszegmentĂĄlĂł eljĂĄrĂĄst, melyet sikeresen alkalmaztunk szĂnes kĂ©pek teljesen automatikus szegmentĂĄlĂĄsĂĄra. Az eredmĂ©nyeinket a BMVC 2004 konferenciĂĄn Ă©s az Image and Vision Computing folyĂłiratban publikĂĄltuk. 3) A modell többrĂ©tegƱ tovĂĄbbfejlesztĂ©sĂ©t alkalmaztuk video objektumok szĂn Ă©s mozgĂĄs alapĂș szegmentĂĄlĂĄsĂĄra, melynek eredmĂ©nyeit a HACIPPR 2005 illetve az ACCV 2006 nemzetközi konferenciĂĄkon publikĂĄltuk. SzintĂ©n ehhez az alapproblĂ©mĂĄhoz kapcsolĂłdik HorvĂĄth PĂ©ter hallgatĂłmmal az optic flow szamĂtĂĄsĂĄval illetve szĂn, textĂșra Ă©s mozgĂĄs alapĂș GVF aktĂv kontĂșrral kapcsoltos munkĂĄink. TDK dolgozata elsĆ helyezĂ©st Ă©rt el a 2004-es helyi versenyen, az eredmĂ©nyeinket pedig a KEPAF 2004 konferenciĂĄn publikĂĄltuk. 4) HorvĂĄth PĂ©ter PhD hallgatĂłmmal illetve az franciaorszĂĄgi INRIA Ariana csoportjĂĄval, kidolgoztunk egy olyan kĂ©pszegmentĂĄlĂł eljĂĄrĂĄst, amely a szegmentĂĄlandĂł objektum alakjĂĄt is figyelembe veszi. Az eredmĂ©nyeinket az ICPR 2006 illetve az ICCVGIP 2006 konferenciĂĄn foglaltuk össze. A modell elĆzmĂ©nyekĂ©nt kidolgoztunk tovĂĄbbĂĄ egy alakzat-momemntumokon alapulĂł aktĂv kontĂșr modellt, amelyet a HACIPPR 2005 konferenciĂĄn publikĂĄltunk. | 1) We have proposed a monogrid MRF model which is able to combine color and texture features in order to improve the quality of segmentation results. We have also solved the estimation of model parameters. This work has been published in the Image and Vision Computing journal. 2) We have proposed an RJMCMC sampling method which is able to identify multi-dimensional Gaussian mixtures. Using this technique, we have developed a fully automatic color image segmentation algorithm. Our results have been published at BMVC 2004 international conference and in the Image and Vision Computing journal. 3) A new multilayer MRF model has been proposed which is able to segment an image based on multiple cues (such as color, texture, or motion). This work has been published at HACIPPR 2005 and ACCV 2006 international conferences. The work on optic flow computation and color-, texture-, and motion-based GVF active contours doen with my student, Mr. Peter Horvath, won a first price at the local Student Research Competition in 2004. Results have been presented at KEPAF 2004 conference. 4) A new shape prior, called 'gas of circles' has been introduced using active contour models. This work is done in collaboration with the Ariana group of INRIA, France and my PhD student, Mr. Peter Horvath. Results are published at the ICPR 2006 and ICCVGIP 2006 conferences. A preliminary study on active contour models using shape-moments has also been done, these results are published at HACIPPR 2005
Adaptive Markov random fields for joint unmixing and segmentation of hyperspectral image
Linear spectral unmixing is a challenging problem in hyperspectral imaging that consists of decomposing an observed pixel into a linear combination of pure spectra (or endmembers) with their corresponding proportions (or abundances). Endmember extraction algorithms can be employed for recovering the spectral signatures while abundances are estimated using an inversion step. Recent works have shown that exploiting spatial dependencies between image pixels can improve spectral unmixing. Markov random fields (MRF) are classically used to model these spatial correlations and partition the image into multiple classes with homogeneous abundances. This paper proposes to define the MRF sites using similarity regions. These regions are built using a self-complementary area filter that stems from the morphological theory. This kind of filter divides the original image into flat zones where the underlying pixels have the same spectral values. Once the MRF has been clearly established, a hierarchical Bayesian algorithm is proposed to estimate the abundances, the class labels, the noise variance, and the corresponding hyperparameters. A hybrid Gibbs sampler is constructed to generate samples according to the corresponding posterior distribution of the unknown parameters and hyperparameters. Simulations conducted on synthetic and real AVIRIS data demonstrate the good performance of the algorithm
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