23,675 research outputs found
From Image-level to Pixel-level Labeling with Convolutional Networks
We are interested in inferring object segmentation by leveraging only object
class information, and by considering only minimal priors on the object
segmentation task. This problem could be viewed as a kind of weakly supervised
segmentation task, and naturally fits the Multiple Instance Learning (MIL)
framework: every training image is known to have (or not) at least one pixel
corresponding to the image class label, and the segmentation task can be
rewritten as inferring the pixels belonging to the class of the object (given
one image, and its object class). We propose a Convolutional Neural
Network-based model, which is constrained during training to put more weight on
pixels which are important for classifying the image. We show that at test
time, the model has learned to discriminate the right pixels well enough, such
that it performs very well on an existing segmentation benchmark, by adding
only few smoothing priors. Our system is trained using a subset of the Imagenet
dataset and the segmentation experiments are performed on the challenging
Pascal VOC dataset (with no fine-tuning of the model on Pascal VOC). Our model
beats the state of the art results in weakly supervised object segmentation
task by a large margin. We also compare the performance of our model with state
of the art fully-supervised segmentation approaches.Comment: CVPR201
A convolutional autoencoder approach for mining features in cellular electron cryo-tomograms and weakly supervised coarse segmentation
Cellular electron cryo-tomography enables the 3D visualization of cellular
organization in the near-native state and at submolecular resolution. However,
the contents of cellular tomograms are often complex, making it difficult to
automatically isolate different in situ cellular components. In this paper, we
propose a convolutional autoencoder-based unsupervised approach to provide a
coarse grouping of 3D small subvolumes extracted from tomograms. We demonstrate
that the autoencoder can be used for efficient and coarse characterization of
features of macromolecular complexes and surfaces, such as membranes. In
addition, the autoencoder can be used to detect non-cellular features related
to sample preparation and data collection, such as carbon edges from the grid
and tomogram boundaries. The autoencoder is also able to detect patterns that
may indicate spatial interactions between cellular components. Furthermore, we
demonstrate that our autoencoder can be used for weakly supervised semantic
segmentation of cellular components, requiring a very small amount of manual
annotation.Comment: Accepted by Journal of Structural Biolog
Spinal cord gray matter segmentation using deep dilated convolutions
Gray matter (GM) tissue changes have been associated with a wide range of
neurological disorders and was also recently found relevant as a biomarker for
disability in amyotrophic lateral sclerosis. The ability to automatically
segment the GM is, therefore, an important task for modern studies of the
spinal cord. In this work, we devise a modern, simple and end-to-end fully
automated human spinal cord gray matter segmentation method using Deep
Learning, that works both on in vivo and ex vivo MRI acquisitions. We evaluate
our method against six independently developed methods on a GM segmentation
challenge and report state-of-the-art results in 8 out of 10 different
evaluation metrics as well as major network parameter reduction when compared
to the traditional medical imaging architectures such as U-Nets.Comment: 13 pages, 8 figure
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