a comparative study of machine learning algorithms for physiological signal classification

Abstract The present work aims at the evaluation of the effectiveness of different machine learning algorithms on a variety of clinical data, derived from small, medium, and large publicly available databases. To this end, several algorithms were tested, and their performance, both in terms of accuracy and time required for the training and testing phases, are here reported. Sometimes a data preprocessing phase was also deemed necessary to improve the performance of the machine learning procedures, in order to reduce the problem size. In such cases a detailed analysis of the compression strategy and results is also presented

ECG-Based Arrhythmia Classification using Recurrent Neural Networks in Embedded Systems

Cardiac arrhythmia is one of the most important cardiovascular diseases (CVDs), causing million deaths every year. Moreover it is difficult to diagnose because it occurs intermittently and as such requires the analysis of large amount of data, collected during the daily life of patients. An important tool for CVD diagnosis is the analysis of electrocardiogram (ECG), because of its non-invasive nature and simplicity of acquisition. In this work we propose a classification algorithm for arrhythmia based on recurrent neural networks (RNNs) that operate directly on ECG data, exploring the effectiveness and efficiency of several variations of the general RNN, in particular using different types of layers implementing the network memory. We use the MIT-BIH arrhythmia database and the evaluation protocol recommended by the Association for the Advancement of Medical Instrumentation (AAMI). After designing and testing the effectiveness of the different networks, we then test its porting to an embedded platform, namely the STM32 microcontroller architecture from ST, using a specific framework to port a pre-built RNN to the embedded hardware, convert it to optimized code for the platform and evaluate its performance in terms of resource usage. Both in binary and multiclass classification, the basic RNN model outperforms the other architectures in terms of memory storage (∼117 KB), number of parameters (∼5 k) and inference time (∼150 ms), while the RNN LSTM-based achieved the best accuracy (∼90%)

Advanced Signal Processing in Wearable Sensors for Health Monitoring

Smart, wearables devices on a miniature scale are becoming increasingly widely available, typically in the form of smart watches and other connected devices. Consequently, devices to assist in measurements such as electroencephalography (EEG), electrocardiogram (ECG), electromyography (EMG), blood pressure (BP), photoplethysmography (PPG), heart rhythm, respiration rate, apnoea, and motion detection are becoming more available, and play a significant role in healthcare monitoring. The industry is placing great emphasis on making these devices and technologies available on smart devices such as phones and watches. Such measurements are clinically and scientifically useful for real-time monitoring, long-term care, and diagnosis and therapeutic techniques. However, a pertaining issue is that recorded data are usually noisy, contain many artefacts, and are affected by external factors such as movements and physical conditions. In order to obtain accurate and meaningful indicators, the signal has to be processed and conditioned such that the measurements are accurate and free from noise and disturbances. In this context, many researchers have utilized recent technological advances in wearable sensors and signal processing to develop smart and accurate wearable devices for clinical applications. The processing and analysis of physiological signals is a key issue for these smart wearable devices. Consequently, ongoing work in this field of study includes research on filtration, quality checking, signal transformation and decomposition, feature extraction and, most recently, machine learning-based methods

Wearable Wireless Devices

No abstract available

ECG analysis and classification using CSVM, MSVM and SIMCA classifiers

Reliable ECG classification can potentially lead to better detection methods and increase accurate diagnosis of arrhythmia, thus improving quality of care. This thesis investigated the use of two novel classification algorithms: CSVM and SIMCA, and assessed their performance in classifying ECG beats. The project aimed to introduce a new way to interactively support patient care in and out of the hospital and develop new classification algorithms for arrhythmia detection and diagnosis. Wave (P-QRS-T) detection was performed using the WFDB Software Package and multiresolution wavelets. Fourier and PCs were selected as time-frequency features in the ECG signal; these provided the input to the classifiers in the form of DFT and PCA coefficients. ECG beat classification was performed using binary SVM. MSVM, CSVM, and SIMCA; these were subsequently used for simultaneously classifying either four or six types of cardiac conditions. Binary SVM classification with 100% accuracy was achieved when applied on feature-reduced ECG signals from well-established databases using PCA. The CSVM algorithm and MSVM were used to classify four ECG beat types: NORMAL, PVC, APC, and FUSION or PFUS; these were from the MIT-BIH arrhythmia database (precordial lead group and limb lead II). Different numbers of Fourier coefficients were considered in order to identify the optimal number of features to be presented to the classifier. SMO was used to compute hyper-plane parameters and threshold values for both MSVM and CSVM during the classifier training phase. The best classification accuracy was achieved using fifty Fourier coefficients. With the new CSVM classifier framework, accuracies of 99%, 100%, 98%, and 99% were obtained using datasets from one, two, three, and four precordial leads, respectively. In addition, using CSVM it was possible to successfully classify four types of ECG beat signals extracted from limb lead simultaneously with 97% accuracy, a significant improvement on the 83% accuracy achieved using the MSVM classification model. In addition, further analysis of the following four beat types was made: NORMAL, PVC, SVPB, and FUSION. These signals were obtained from the European ST-T Database. Accuracies between 86% and 94% were obtained for MSVM and CSVM classification, respectively, using 100 Fourier coefficients for reconstructing individual ECG beats. Further analysis presented an effective ECG arrhythmia classification scheme consisting of PCA as a feature reduction method and a SIMCA classifier to differentiate between either four or six different types of arrhythmia. In separate studies, six and four types of beats (including NORMAL, PVC, APC, RBBB, LBBB, and FUSION beats) with time domain features were extracted from the MIT-BIH arrhythmia database and the St Petersburg INCART 12-lead Arrhythmia Database (incartdb) respectively. Between 10 and 30 PCs, coefficients were selected for reconstructing individual ECG beats in the feature selection phase. The average classification accuracy of the proposed scheme was 98.61% and 97.78 % using the limb lead and precordial lead datasets, respectively. In addition, using MSVM and SIMCA classifiers with four ECG beat types achieved an average classification accuracy of 76.83% and 98.33% respectively. The effectiveness of the proposed algorithms was finally confirmed by successfully classifying both the six beat and four beat types of signal respectively with a high accuracy ratio

Mobile Thermography-based Physiological Computing for Automatic Recognition of a Person’s Mental Stress

This thesis explores the use of Mobile Thermography1, a significantly less investigated sensing capability, with the aim of reliably extracting a person’s multiple physiological signatures and recognising mental stress in an automatic, contactless manner. Mobile thermography has greater potentials for real-world applications because of its light-weight, low computation-cost characteristics. In addition, thermography itself does not necessarily require the sensors to be worn directly on the skin. It raises less privacy concerns and is less sensitive to ambient lighting conditions. The work presented in this thesis is structured through a three-stage approach that aims to address the following challenges: i) thermal image processing for mobile thermography in variable thermal range scenes; ii) creation of rich and robust physiology measurements; and iii) automated stress recognition based on such measurements. Through the first stage (Chapter 4), this thesis contributes new processing techniques to address negative effects of environmental temperature changes upon automatic tracking of regions-of-interest and measuring of surface temperature patterns. In the second stage (Chapters 5,6,7), the main contributions are: robustness in tracking respiratory and cardiovascular thermal signatures both in constrained and unconstrained settings (e.g. respiration: strong correlation with ground truth, r=0.9987), and investigation of novel cortical thermal signatures associated with mental stress. The final stage (Chapters 8,9) contributes automatic stress inference systems that focus on capturing richer dynamic information of physiological variability: firstly, a novel respiration representation-based system (which has achieved state-of-the-art performance: 84.59% accuracy, two stress levels), and secondly, a novel cardiovascular representation-based system using short-term measurements of nasal thermal variability and heartrate variability from another sensing channel (78.33% accuracy achieved from 20seconds measurements). Finally, this thesis contributes software libraries and incrementally built labelled datasets of thermal images in both constrained and everyday ubiquitous settings. These are used to evaluate performance of our proposed computational methods across the three-stages

A Multi-Class ECG Beat Classifier Based on the Truncated KLT Representation

Automatic classification of electrocardiogram (ECG) signals is of paramount importance in the detection of a wide range of heartbeat abnormalities as aid to improve the diagnostic achieved by cardiologists. In this paper an effective multi-class beat classifier, based on statistical identification of a minimum-complexity model, is proposed. The classifier is trained by extracting from the ECG signal a multivariate random vector by means of a truncated Karhunen-Loève transform (KLT) representation. The resulting statistical model is thus estimated using a robust and efficient Expectation Maximization (EM) algorithm to find the optimal parameters of a Gaussian mixture model. Based on the above statistical characterization a multi-class ECG classifier was derived. The experiments, conducted on the ECG signals from the MIT-BIH arrhythmia database, demonstrated the excellent performance of this technique to classify the ECG signals into different disease categories, with a reduced model complexity